Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04035 TTGGCGCCGCCACCGCCATCCCCGTCAAAAGTTTCATCGCCCCCATCCCCTACTCCGAACTCGACAGCAGAGCCAGGCTCTCCTGGAGGTACAATCAGCACTGGTGGTGTGGTGGCTATTGGTGTGGTGGCTGGATTTCTGCTACTTGGCTTCATTGGTGTTCTTATATGGTGCATGAGAAGGCAAAAGAGAAAGACTCCTGTGAATGGTGGTTATGTCATGCCATCCACTCTTGCCTCCTCTCCTGAATCAGATTCATCGTTTTTTAAGACACACTCCTCAGCTCCTCTTGTGCAAAGTGGCTCTGGCAGTGATATTGTGTACACACCATCTGATCCTGGTGGTCTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAACTGATGAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGAGGATTTGGTTGTGTGTATAAAGGGCACCTTCCTGATGGAAGAGAGATAGCAGTGAAACAACTGAAGATTGGTGGAGGTCAGGGAGAGAGAGAATTCAAAGCTGAAGTGGAAATTATCAGTCGTATACATCATCGCCATTTGGTTTCTTTAGTAGGATACTGCATTGAAGACAGCAGAAGACTACTTGTCTATGACTACGTTCCTAACAATACCCTTTACTTCCATCTACATGGGGAAAACCAGCCTGTGCTAGAATGGGCAAACCGTGTCAAAATTGCAGCTGGTGCAGCCCGTGGACTAGCTTATCTCCATGAAGACTGCAACCCTCGGATCATTCACAGGGATATCAAGTCGTCAAACATTCTTTTAGATTTCAATTATGAAGCTAAGGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCAAATACGCATATTACCACGCGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCTTCAAGTGGTAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGAGTCGTGCTTTTGGAGCTAATTACCGGGCGGAAGCCGGTAGATGTATCCCAACCTTTGGGAGATGAAAGCCTGGTTGAATGGAAAGATGAAGAACTAATGCCACTAGAAATTGCAGTTCTACCTGTGAAAAAGAACATTTCGGTTGACATGGCTCGGCCTTTACTAAGTCATGCAATTGATACTGAGGAATTCAGTAGTTTGGCAGATCCAAGGCTAGAAAAGAATTACATTGAGAGTGATTTGTATTGCATGATTGAGGTTGCTGCAGCTTGTGTGCGGCATTCAGCTTCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGGTTCTGATCTAACTAATGGAATGCAACTTGGGGAAAGGCACTGTGTACATAATGGAAGAGCTTATTTCAAAGATATTGTGAAGCTGAGCCAATGGCTGGCTCTGGTTGAGTTTTTGTTGCTTGCACATATGGCCAAGGCAATAAATTCTTGCTTCATGCCAAAGTCTTCTTTTCAGGGTTTAGGTCAAAGCTCTTAG 1503 0.4471 MAPPPPSPSKVSSPPSPTPNSTAEPGSPGGTISTGGVVAIGVVAGFLLLGFIGVLIWCMRRQKRKTPVNGGYVMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDIVYTPSDPGGLGHSRSWFSYEELMKATNGFSSQNLLGEGGFGCVYKGHLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDSRRLLVYDYVPNNTLYFHLHGENQPVLEWANRVKIAAGAARGLAYLHEDCNPRIIHRDIKSSNILLDFNYEAKVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPLGDESLVEWKDEELMPLEIAVLPVKKNISVDMARPLLSHAIDTEEFSSLADPRLEKNYIESDLYCMIEVAAACVRHSASKRPRMGQVVRAFDSLGGSDLTNGMQLGERHCVHNGRAYFKDIVKLSQWLALVEFLLLAHMAKAINSCFMPKSSFQGLGQSS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04035 500 ProSitePatterns Protein kinases ATP-binding region signature. 141 163 IPR017441 GO:0005524
Vimu7g04035 500 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 47 453 IPR047117 -
Vimu7g04035 500 ProSiteProfiles Protein kinase domain profile. 135 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04035 500 FunFam proline-rich receptor-like protein kinase PERK8 211 361 - -
Vimu7g04035 500 SMART serkin_6 135 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04035 500 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
Vimu7g04035 500 FunFam Proline-rich receptor-like protein kinase PERK8 108 210 - -
Vimu7g04035 500 MobiDBLite consensus disorder prediction 1 29 - -
Vimu7g04035 500 SUPERFAMILY Protein kinase-like (PK-like) 116 429 IPR011009 -
Vimu7g04035 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vimu7g04035 500 CDD STKc_IRAK 141 434 - -
Vimu7g04035 500 MobiDBLite consensus disorder prediction 1 22 - -
Vimu7g04035 500 Pfam Protein kinase domain 137 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g04035 500 Gene3D Transferase(Phosphotransferase) domain 1 211 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04035 Vimu-Chr7 38224850 38228227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04035 14 427 Trihelix Transcription Factor Family AT1G68690 67.308 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu7g04035 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04035 - - vun:114173712 752.666