Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04015 ATGGATACAGACGCCGTTGTTTCCTTCGATCATGTCTCGCCGGAGGATTCTCACGAGGTTCATGTTTTGGCCGTCGACGATAGCCTCGTTGATCGAAAGGTCATTGAACGCTTGCTCAAAATCTCAGCTTGTAAAGTTACAGCTGTGGACAGTGGAATCAGAGCACTGCAATTTCTGGGGTTGGACGAGCAGAGAAGGACCTCTGAATCTGATGGTTTTGTCCCGAGTTTGAAGGTGGATCTAATTATCACAGACTACTGCATGCCCGAGATGACAGGTTATGAATTGCTCAAGAAAATAAAGGAATCGTCCATGTTCAGGGAAATTCCAGTAGTGATTATGTCTTCCGAAAACGTTTTGCCTCGCATAGACAGATGCTTGGAGGAAGGTGCAGAGGATTTCATAGTGAAACCAGTGAAATTATCTGACGTGAAACGGTTGAAGGATTACATGACAACGAGAGAGGTTAAGGTTGGAAGCCATGACAGAGGAAGAGGTGTTGATGATGTTGGTGTGGAGATTAACAACAAAAGAAAGCTGGAAGAAGAGGAAGAGACTTCTGACATGTCATCATCGCCACCGTCCATTTCTACACTTTCATCATCACCGTCCGTTTCTTCACCATCATCTTCTCCCACATCTTCACCCACCGTTCTCGCTTCTCCAATCAGACGGCTTAAAATGAGCAGCACGGATTGA 699 0.4564 MDTDAVVSFDHVSPEDSHEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDEQRRTSESDGFVPSLKVDLIITDYCMPEMTGYELLKKIKESSMFREIPVVIMSSENVLPRIDRCLEEGAEDFIVKPVKLSDVKRLKDYMTTREVKVGSHDRGRGVDDVGVEINNKRKLEEEEETSDMSSSPPSISTLSSSPSVSSPSSSPTSSPTVLASPIRRLKMSSTD 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04015 232 MobiDBLite consensus disorder prediction 157 232 - -
Vimu7g04015 232 Pfam Response regulator receiver domain 22 144 IPR001789 GO:0000160
Vimu7g04015 232 MobiDBLite consensus disorder prediction 189 232 - -
Vimu7g04015 232 ProSiteProfiles Response regulatory domain profile. 21 152 IPR001789 GO:0000160
Vimu7g04015 232 Gene3D - 20 197 - -
Vimu7g04015 232 MobiDBLite consensus disorder prediction 157 186 - -
Vimu7g04015 232 SUPERFAMILY CheY-like 20 147 IPR011006 -
Vimu7g04015 232 CDD REC_typeA_ARR 22 147 - -
Vimu7g04015 232 SMART REC_2 20 151 IPR001789 GO:0000160
Vimu7g04015 232 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 200 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04015 Vimu-Chr7 37941574 37942850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04015 14 224 Response Regulator Gene Family AT1G59940 57.919 3.29e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu7g04015 Response_reg 5.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04015 K14492 - gmx:100787696 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04015 7 37941574 37942850 Vimu7g04015 7 37941574 37942850 ECH
Vimu7g04015 7 37941574 37942850 Vimu11g02543 11 44927538 44928616 PCT