Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g04001 ATGAAGGACTTCGCAGTTCGGAGACTTGGCGATCACTCTGTAAATTTCGGATTTGGCTCCTCTGAGATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCTGTGGTGTCTGCCCGAGGAGAAGCCATTTGGCTCTTCAATCGAGTGGTGAGGCTTTTCATTTTTTGGTCTGGGCAACCGCAGATGGCAAATGGAGGTGCTCAGAAATTGACAACTAATGATGCCCTAGCATATCTTAAAGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGACGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACCGCGGGTGTCATTGGAAGAGTGAAGGAACTGTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGGTATGAAATCACACTTCCGTCAGAGGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATAAAGACTCGTTTTCAAGGCGACGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTACCGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCATCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCGTCTGCAAGAAATTCTCTTCTTCGTGATAGGAGTTCAATGCCAACAGTACGGCCAATGCATGTTGAAAAGCGAGAAAGGACCATGGCTTCACATGGGGATCGGGACCCCAGTGTTGATCGTCCTGATCCAGATCAGGACAGAGGTTTGTTAAGGATAGAAAAGGAGAGGAGACGTGCAGAGAAGGAAAAGGAACGCAGAGAAGATAGAGACAAGAGAGAACGCGAAAAGGATGATAGAGATTATGAGCATGATAGGGAGCAATTTCCTCACAAACGGAATCGTAAGGTTGAGGACTCTGGAGCTGAACCATTGCTTGATGCTGATGAAAAATTTGGTATGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTTGCTTTCTGCGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTATCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACATGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAACTATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTACAATCTGAAAAAAATGATGGTGGGTTTCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGGTGAAGACAGGGAAAGAGAAAGGGATCGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGACCGTGAGTTTCGAGAACGGGATAAATCCACTGTGATTGCCAACAAAGATGTTTTAGGCTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGTACTCCTAGTTATCGGCTCTTACCAAAAAATTACCCAATACCTATAGCTAGCCAGAAAACAGAACTTGGTGCTGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCAGTGAATGTGACAACCAAACGAGTAGAAGAACTGTTAGACAAGATCAATAATAATACAATTAAAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGATTATATGGTGATCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTTTAGCTTTGCCAGTGATATTAACACGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATTCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAGGATACAAAAAGCCTTAGCACCAAAGCGTTGGGCCACTTTGTTAAAGTCCATCAGTCACTGCTTGCTGTTGTGGCTATAGTGGCACAAATCATAGCCATATTTGGGTTATTTATTGCATTAAAATGCCTAACTTTGACTAATGCCTTGCTGGCAGAAATCAAAGAAATTAGTGAAAAAAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAACAGACGGCCAATTCTACCAAACTTGGAGTTTAAGTATTCTGATCTAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCATGTGGAGAAATTTGCACAACCGAACATGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAGCCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACAGAAGATGTTGTCAAGACTAAGAATAATAGTGTCAAGAATGGCTCTGCAAGTGTTGCTGAAAGTGATGGTAGCCCTGTTGTGGGTGCTACCGTCATGAATCAAAAGCATATAAATGTTTCCAGAAATGGGGATGGTTGTATGCCAGTAGATCAGTCAACTTCTAGTAAAGCATGGCAATCAAATGGTGATAATGGGGTTAGAGAGGATAGGTATCTTGACGACCGTGTATTACTTAAAACTGAAACTTTGGGAAATAATACACAGCATGGTAAAATGAATAATATTGCTTTCCCACCTAATGAACTATCAGGATTTAATAATAAGCAAGACCAGTCTAGTGAAAGGTTAGTGAATGCAAATGTCTCTCCCGCATCCGGAATGGAACAAAGCAATGGAAGGACAGACAAAGATAATTTGTCAGGACTCACTGACACTCCTGCTAGACCTGTTAATGCATCTGCTGAAGGAGGAGCTGATATTCCACCTTCAGAGGGTGGTGATTCTGCAAGACCAGGTACATCCACAAATGGGGCCTTTGCCGGAAGCACCAAAGTCCACCGATACCAAGAGGAATCGGTTCGACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAAGATAACTTTGCAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTATGAGTCCGCCATATCAAGATAGACATGGGGACGATGTTTGTGGTGAAACCAGAGGAGAAAACGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGCAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAAGAGCATGAGGATGGAGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCCCATGACGTTGAAGGAGATGGAATGTCATTGCCGTACTCTGAACGCTTTCTCCTAACTGTGAAGCCACTGGCAAAGCATGTTCTCCCAATGTTACATGAGAAGGATAGGAATTCACGAGTTTTCTATGGAAATGATTCCTTTTATGTTCTTTTTAGACTTCATCAGATTCGTTCCAAAGTGTTTGAGTGTGGCCAGATGACTGTCTCTGGAAAGACATTGTATGAGAGGATACAATCAGCAAAGATTAACTCATCATCTGCTGATAGGAAATGGAAGGCTTCGAGTGATACAAGCTCCACTGATCAATATGACAGATTCATGAATGCCCTTTTCAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAATAAACTTCTACAACTACATGCATATGAGAAATCAAGAAAACCTGGAAAATTTGTCGACATAGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATATTCACCTGGAGCAACGAAACTATCTATTCAACTGATGGACTCTGGACATGATAAACCTGAAGTGACTGCCGTTTCCATGGACCCTAATTTTTCAACCTATCTACTTAATGACTTCCTGTCTGTTGTCCCTGACAAAAAAGAGAAGTCAGGGATTTTCTTAAAAAGGAATAAACGTAGATATGCTGGTAGTGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAGATTATTAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCTAAGGTCTCTTACGTTTTAGATACTGAAGACTTTTTGTATCGGGTGAGAAGGAAACGAAGAGTCTTGCTTCCGAGGAGTTCAGGCACCCATGAACAGGCACAGTCTTCAAACATTCGTTCAAGAAGACTGCAACGATTCCGCAACATGTTTACCATTACATGA 4554 0.4084 MKDFAVRRLGDHSVNFGFGSSEMKRSRDEVFTSCSQLKRPVVSARGEAIWLFNRVVRLFIFWSGQPQMANGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIGRVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSLLRDRSSMPTVRPMHVEKRERTMASHGDRDPSVDRPDPDQDRGLLRIEKERRRAEKEKERREDRDKREREKDDRDYEHDREQFPHKRNRKVEDSGAEPLLDADEKFGMRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRHELQSLVGDLLGNYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKGEDRERERDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPIASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDIPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALGHFVKVHQSLLAVVAIVAQIIAIFGLFIALKCLTLTNALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYSDLDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVVKTKNNSVKNGSASVAESDGSPVVGATVMNQKHINVSRNGDGCMPVDQSTSSKAWQSNGDNGVREDRYLDDRVLLKTETLGNNTQHGKMNNIAFPPNELSGFNNKQDQSSERLVNANVSPASGMEQSNGRTDKDNLSGLTDTPARPVNASAEGGADIPPSEGGDSARPGTSTNGAFAGSTKVHRYQEESVRPFKSEREEGELSPNGDFEEDNFAVYGGNGLDAVHKGKDGGMSPPYQDRHGDDVCGETRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVLPMLHEKDRNSRVFYGNDSFYVLFRLHQIRSKVFECGQMTVSGKTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALFSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLHAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPGATKLSIQLMDSGHDKPEVTAVSMDPNFSTYLLNDFLSVVPDKKEKSGIFLKRNKRRYAGSDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLYRVRRKRRVLLPRSSGTHEQAQSSNIRSRRLQRFRNMFTIT 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 456 490 - -
Vimu7g04001 1517 PANTHER SIN3B-RELATED 74 1374 IPR039774 GO:0003714
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 244 346 - -
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 1021 1035 - -
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 1142 1167 - -
Vimu7g04001 1517 SUPERFAMILY PAH2 domain 158 229 IPR036600 GO:0006355
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 1040 1058 - -
Vimu7g04001 1517 Pfam C-terminal domain of Sin3a protein 1214 1476 IPR031693 -
Vimu7g04001 1517 Pfam Paired amphipathic helix repeat 97 141 IPR003822 GO:0006355
Vimu7g04001 1517 Pfam Paired amphipathic helix repeat 183 227 IPR003822 GO:0006355
Vimu7g04001 1517 Pfam Paired amphipathic helix repeat 387 431 IPR003822 GO:0006355
Vimu7g04001 1517 Coils Coil 288 317 - -
Vimu7g04001 1517 Gene3D Paired amphipathic helix 363 435 IPR036600 GO:0006355
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 254 346 - -
Vimu7g04001 1517 ProSiteProfiles PAH domain profile. 74 144 IPR003822 GO:0006355
Vimu7g04001 1517 FunFam Paired amphipathic helix protein Sin3 80 142 - -
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 1115 1129 - -
Vimu7g04001 1517 FunFam Paired amphipathic helix protein SIN3 362 436 - -
Vimu7g04001 1517 ProSiteProfiles PAH domain profile. 160 230 IPR003822 GO:0006355
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 458 490 - -
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 1088 1107 - -
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 892 915 - -
Vimu7g04001 1517 ProSiteProfiles PAH domain profile. 365 434 IPR003822 GO:0006355
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 935 1000 - -
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 935 1167 - -
Vimu7g04001 1517 Gene3D Paired amphipathic helix 80 142 IPR036600 GO:0006355
Vimu7g04001 1517 SUPERFAMILY PAH2 domain 363 431 IPR036600 GO:0006355
Vimu7g04001 1517 Gene3D Paired amphipathic helix 159 231 IPR036600 GO:0006355
Vimu7g04001 1517 SMART hdac_interact2seq4b 529 629 IPR013194 -
Vimu7g04001 1517 MobiDBLite consensus disorder prediction 892 919 - -
Vimu7g04001 1517 Pfam Sin3 family co-repressor 532 623 IPR013194 -
Vimu7g04001 1517 FunFam Paired amphipathic helix SIN3-like protein 159 230 - -
Vimu7g04001 1517 SUPERFAMILY PAH2 domain 74 143 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g04001 Vimu-Chr7 37837335 37848710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g04001 65 179 WRKY Transcription Factor Family AT4G12020 48.718 2.47e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu7g04001 Sin3a_C 1.2e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g04001 K11644 - gmx:100811928 2473.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g04001 7 37837335 37848710 Vimu7g04001 7 37837335 37848710 ECH
Vimu7g04001 7 37837335 37848710 Vimu11g02529 11 44650356 44660598 PCT