Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03992 ATGTCTCGCACGTGCTCACAGTGCGGCAACAACGGCCACAACTCACGGACATGCACCGACGGTGGTGCCGCTGTTTCCGGCGGCTCCTCTCCTCAGGAGACCGGCTTCATGCTGTTTGGCGTGCGAGTCACCGAAGGAATTTCCTCCTTCAGGAAGAGCGCTAGCATGAACAACCTCTCTCAATACGACGCCGATTCCAACACAGCCGACGCCGGGTACGCCTCCGATGACGTCGTTCACGCATCCGGCCGCACGCGCGAGCGAAAGCGAGTTTTTGGATTGGTGAACAAAGGTGTTCCTTGGACGGAGGAAGAGCACAGACTGTTCCTGTTAGGGTTGCACAAGGTTGGAAAGGGAGATTGGAGAGGAATTTCAAGAAACTTCGTCAAAACTCGCACGCCAACTCAGGTCGCCAGTCACGCTCAGAAGTACTTCCTCCGTCGCCACAACCAGAACCGCCGCCGCCGGAGATCTAGCCTCTTTGACATCACTACCGATACGGTGATGGAGTCTTCTACTATAATGGAAGAAGAACAAGTTCAGCAGGAAACGGCAGCGGCGCCTATCCCGGCAGCATATCCGCCGTCGCATTACGGCGGTTTCCCTGGCGCAGGTTTTCCGATGAGTCTATCTCCAGTGGTGTTGCCGGCGAGCAGTGAGAGGCTAGCCAAGCCGATTAGGCCGACGCCGATTTTGCCTGTCCCACCGTCGTCGAAGATGGCTAGTTTGAACTTGAAAGAGAAAGCTTCTCCGACAAATCTCATAGAGCCTTTACCGTTGTCGTTAAATCTGCCATCGCCGACGCCGCGGTCACAGGATAAGTCACCGGCGAGCAGTGACCACTCATCGCCGTCGTCGTCATCATCGGCTTTTCAGGCGATATCTGCTGGGAAGTTCGGCGGCGGTGGGGACAGTATCATCAGCGTTGCTTGA 933 0.5616 MSRTCSQCGNNGHNSRTCTDGGAAVSGGSSPQETGFMLFGVRVTEGISSFRKSASMNNLSQYDADSNTADAGYASDDVVHASGRTRERKRVFGLVNKGVPWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSTIMEEEQVQQETAAAPIPAAYPPSHYGGFPGAGFPMSLSPVVLPASSERLAKPIRPTPILPVPPSSKMASLNLKEKASPTNLIEPLPLSLNLPSPTPRSQDKSPASSDHSSPSSSSSAFQAISAGKFGGGGDSIISVA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03992 310 PANTHER TRANSCRIPTION FACTOR KUA1 1 252 - -
Vimu7g03992 310 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Vimu7g03992 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 147 IPR006447 GO:0003677
Vimu7g03992 310 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Vimu7g03992 310 ProSiteProfiles SANT domain profile. 101 149 IPR017884 -
Vimu7g03992 310 SMART sant 97 147 IPR001005 -
Vimu7g03992 310 MobiDBLite consensus disorder prediction 265 294 - -
Vimu7g03992 310 MobiDBLite consensus disorder prediction 1 26 - -
Vimu7g03992 310 FunFam transcription factor MYB1R1 99 150 - -
Vimu7g03992 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 149 IPR017930 -
Vimu7g03992 310 Gene3D - 99 150 - -
Vimu7g03992 310 CDD SANT 100 145 IPR001005 -
Vimu7g03992 310 SUPERFAMILY Homeodomain-like 96 148 IPR009057 -
Vimu7g03992 310 MobiDBLite consensus disorder prediction 250 310 - -
Vimu7g03992 310 ProSiteProfiles Myb-like domain profile. 100 145 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03992 Vimu-Chr7 37727480 37728758 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu7g03992 Myb_DNA-binding 3.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03992 - - var:108322503 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03992 7 37727480 37728758 Vimu7g03992 7 37727480 37728758 ECH
Vimu7g03992 7 37727480 37728758 Vimu7g03992 7 37727480 37728758 PCT