Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03983 ATGGATCCGGCCGCCATCATCAACGCCGCCGCCGCCAACACAACGTCCTACAATCTCTCCGAGATCTGGCAGTTCCCGCCTCCAAACGCGCCAGACGCTACTGCCGCGCTGTGCCTCAGTAGGGCTCATTTCGGGCACGGTCTTTCGGATTTCGGCCCTGGCCCGGCTAGCATTGGCCACAAAAAGAGGCGCGACGCCGAGGAGGAGGAATCGGTTAAGGGCGTCTCCACCAGCAATGGCGTGGTAGAGTTTGTTTGTGTTGAAGATGAAAGTTTTTGGGTATTGGGATTTGTGCAGAAAGAGGGTTGTGGTGTTGGTGATGGGAAACGGGTTAAAACAACAGGTAACCAGAAGAGTGAGAGTGCGAAAGGTGAAGGAGAAAGCAGTTCAGGAAAGCTTGCGGAGCAAGGTGGAAAGCCACCTCCAGAGCCTCCTTCAAAGCAAGATTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTCGCAGAAAGGGCTAGACGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCGTTGGTTCTTGATGAGATAATTAATTATATCCAATCGCTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAGGCCGTAAATTCAAGAATACCCTCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGATCAGCAAACATTTGATACAACTGGCATCGCATTCGCTTCTCAACCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACATAG 843 0.4935 MDPAAIINAAAANTTSYNLSEIWQFPPPNAPDATAALCLSRAHFGHGLSDFGPGPASIGHKKRRDAEEEESVKGVSTSNGVVEFVCVEDESFWVLGFVQKEGCGVGDGKRVKTTGNQKSESAKGEGESSSGKLAEQGGKPPPEPPSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIPSGIEVFPPKDFDQQTFDTTGIAFASQPTREYSRGSSPEWLHMQVGSGFERAT 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03983 280 SMART finulus 165 215 IPR011598 GO:0046983
Vimu7g03983 280 MobiDBLite consensus disorder prediction 57 72 - -
Vimu7g03983 280 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Vimu7g03983 280 Gene3D - 156 229 IPR036638 GO:0046983
Vimu7g03983 280 FunFam Basic helix-loop-helix transcription factor 156 228 - -
Vimu7g03983 280 Coils Coil 206 226 - -
Vimu7g03983 280 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983
Vimu7g03983 280 MobiDBLite consensus disorder prediction 49 74 - -
Vimu7g03983 280 MobiDBLite consensus disorder prediction 106 148 - -
Vimu7g03983 280 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 227 IPR036638 GO:0046983
Vimu7g03983 280 CDD bHLH_AtBPE_like 149 234 - -
Vimu7g03983 280 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 250 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03983 Vimu-Chr7 37581861 37588976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03983 1 280 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 44.816 6.78e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g03983 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03983 - - gmx:100794893 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03983 7 37581861 37588976 Vimu7g03983 7 37581861 37588976 ECH
Vimu7g03983 7 37581861 37588976 Vimu7g03983 7 37581861 37588976 PCT