Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03963 ATGTCTTCCTCCCTCTTCATCATTTTACTCTTCCTCTACCTCTTCAGACTCTGCAACACTCAAACTTGCTCTTCGAATAACACAAACAAAAACCCTAATCCCTGCCCTCCCTTCTCCTCTCACCCACCTTTCCCTTTCTCCTCCACACAAGGCTGTGGCCACCCCTCCTTCCAGATAACCTGCGCCAGCCCCCATTCTTTCATCTCCATCAACAACCTCTCCTTCTCCATACTTTCCTACAACTCCAACACCTCCTCCATAACTCTCTCCCCTCACCCTCTCCCAACTCCTCACCCTAACTGCCCCTCCTTCCCCTCCATTCCTACCCGCTCCATCAACCTCTCCGCCACCCCTTTTCGTGTCTCAGCTGCCACCTGCTCTCGCCTCTCCTTCCTCCGCCCCTGCTCCCCGCCTTCCCTCCCCAACTGCTCCCACTGCCCCTCCCAATGCCACCTCATCAAAACTCCCTCCCACCTCCTCCCTGACTGCAGATCCACCCACCACTCTCCTCAGTACTCAGACTCCCCCTGCCTCACCGACATCCTCGGCTACCTCCAACTGTCCCTCAAGAACGGAATCCAACTCGACTGGGACCAAAGCCGTGACCCCTACTTCACTAACTGCACCGTCTGCCGCGCCAACAACGGCACCTGCGGGTTCAACTCCTCCTCCCAGAACAAACCATTCCTCTGCTTCCGCTACCGCTCCCAATCCACACTCACCCCACCATGGATTCGCAAATTCAAACCGAACAAAATGGCCTTTTTCAGCACCCTCATCGCCATCACCTCCCTGCTTCTCCTTATCTCAGTAGCCACCGCCATCCTCCGCTCGGCCAGATCAAAGGCCTCCTCCGTCGCCACGCAGCAAGACCCCACCACACTCTTCCTCCACCACCACCGCTCTGCCAGTCTCCTGCCCCCGGTCTTCACCTACGACGACCTCGCTGCCGCTACCCACAACTTCGACCCCAAGCGGAAAATCGGGGACGGCGGGTTTGGGTCCGTCTACCTCGCGCAGCTCCGCGACGGTCGCCTTGCGGCGGTGAAGTACCTCCACCGCAACCACTCCTCCGCCGCTTTCTCTACCAAGTCCTTCTGTAATGAGATCCTCATCCTCTCCTCGATCCACCACGCGAACCTGGTGAAGCTCCACGGTTACTGTAGCGACCCGAGGGGGCTTCTCCTAGTCTACGATTACATCCCCAACGGAACCCTGGCGGAGCATTTGCACCACCGCAAAGGATCTCTGACGTGGCAGGTGAGGCTCGACATCGCGCTACAAACGGCGTTAGTGATGGAGTATCTTCACTTCTCGGTGGTTCCACCGGTCGTACACAGAGACATCACGTCGTCGAATATTTTCGTGGAGAGGGATATGAGGATCAAGGTGGGAGATTTCGGGTTGTCGCGGCTTCTGGTGGTGCAGGACACGACGTCTTCTTCGAACGGGTTTGTTTGGACCGGGCCTCAAGGAACACCGGGCTATCTGGACCCAGATTACCACCGCTCGTTCCGGTTGACCGAGAAGAGCGACGTCTACAGTTTCGGAGTCGTGTTGTTGGAGCTTATCTCGGGAAAGAAAGCGGTGGATCAGAGCAGAGACAAGCGCGAAATGGCGCTTGCGGATTTGGTTGTTTCCAGGATCCAGATGGGGCAGCTCCACCAAGTTCTGGATCCGGTCTTTAAACTCGGCGACAGCGATGGAGTCGCCGCCGTCGCAGAACTTGCATTCCGCTGCGTGGCGGCGGATAAGGACGACCGGCCGGATTCAAGGGAGGTGGTGGAGGAGCTGCGGCGGGTGCGGAGTCGGACGGCGGCGGCGAAGGAGTGA 1833 0.5805 MSSSLFIILLFLYLFRLCNTQTCSSNNTNKNPNPCPPFSSHPPFPFSSTQGCGHPSFQITCASPHSFISINNLSFSILSYNSNTSSITLSPHPLPTPHPNCPSFPSIPTRSINLSATPFRVSAATCSRLSFLRPCSPPSLPNCSHCPSQCHLIKTPSHLLPDCRSTHHSPQYSDSPCLTDILGYLQLSLKNGIQLDWDQSRDPYFTNCTVCRANNGTCGFNSSSQNKPFLCFRYRSQSTLTPPWIRKFKPNKMAFFSTLIAITSLLLLISVATAILRSARSKASSVATQQDPTTLFLHHHRSASLLPPVFTYDDLAAATHNFDPKRKIGDGGFGSVYLAQLRDGRLAAVKYLHRNHSSAAFSTKSFCNEILILSSIHHANLVKLHGYCSDPRGLLLVYDYIPNGTLAEHLHHRKGSLTWQVRLDIALQTALVMEYLHFSVVPPVVHRDITSSNIFVERDMRIKVGDFGLSRLLVVQDTTSSSNGFVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGKKAVDQSRDKREMALADLVVSRIQMGQLHQVLDPVFKLGDSDGVAAVAELAFRCVAADKDDRPDSREVVEELRRVRSRTAAAKE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03963 610 ProSitePatterns Tyrosine protein kinases specific active-site signature. 444 456 IPR008266 GO:0004672|GO:0006468
Vimu7g03963 610 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Vimu7g03963 610 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 5 605 IPR044652 GO:0004672
Vimu7g03963 610 Pfam Protein tyrosine and serine/threonine kinase 325 598 IPR001245 GO:0004672|GO:0006468
Vimu7g03963 610 Gene3D Transferase(Phosphotransferase) domain 1 401 610 - -
Vimu7g03963 610 Pfam Wall-associated receptor kinase C-terminal 185 232 IPR032872 -
Vimu7g03963 610 Gene3D Phosphorylase Kinase; domain 1 298 400 - -
Vimu7g03963 610 CDD STKc_IRAK 328 598 - -
Vimu7g03963 610 SUPERFAMILY Protein kinase-like (PK-like) 308 601 IPR011009 -
Vimu7g03963 610 FunFam LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.5 401 610 - -
Vimu7g03963 610 ProSiteProfiles Protein kinase domain profile. 322 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03963 610 FunFam Putative serine/threonine-protein kinase At1g18390 family 298 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03963 Vimu-Chr7 37348436 37356617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03963 35 610 Receptor kinase-like Gene Family AT1G69910 61.603 0.0 710
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vimu7g03963 PK_Tyr_Ser-Thr 1.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03963 - - gmx:100816739 858.596