Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03951 ATGGGTGCTGGTGACTACTACAAGATACTGAAGGTGAAACGGGATGCCACTGATGAAGAGGTGAAGAGGGCTTATAGGAGTTTGGCCATGAAATGGCACCCTGATAAGAATCTCGAAGACCCTCTTAGGAAGGAAGAGTCTGAAGCCAAGTTCAAGCAGGTTGCTGAGGCCTACAATGTGCTCAGTGACCCCAAGAAGCGTCAGATCTACGATCTATACGGTCACTATCCTCTTAACTCTCAACGCTTCAGCAAAGAACAAGGTTATGGGATTATGAAAGAAGCAGGGGTGGTTGAAAGCAGTTTGACTTGTACCCTTCTGGAGCTTTACAAGGGTTGCAAAAAGAAGTTGAAGGTCTCAAGGACTGTTCCTGATGAATTCGGTATGTATCCTGTGCCCAAAAGTGAAGAAAAAGAAGGTGGGTTTTATTTGTTTTGGGGAATTGCCATTCTTTCTCCTTTGTTCTTCCTCACTTCAATTTCATTAGGAGCCCTCTTCTTTTGTTTTGGCAGAGTGTCGAAGTCTGTAGAAGAAATCTTGAAGATAGATATTAAACCTGGTTGGAAGAAGGGTACAAAAATCACTTTTCCTGGGAAAGGCAACCAAGAACCAGGAGGAGCTGCAACTGACCTAATTTTTGTGTTGGATGAAAGACCTCATGATATTTTCAAGAGGGATGGAAATGATCTTGTAGTGATCCAGAAGATATTACTTGTAGACGCTCTCATAGGAAAAACTTTTAACTTGACTACTTTGGATGGAAGAGATCTCACAATCCAAGTGACTGATATTGTGAGACCAGGGTTTGAGCTAGTGGTCCCGAATGAAGGTATGCCAATCTCAAAGGAACCTGGCAAGAAAGGAAACCTCAGAATCAAGTTTGATGTTATGTTTCCATCAAGGCTGTCCACACAACAAAAGAGTGATCTAAGAAGGATTCTTCTTAGTGATGTTGATTACTAA 963 0.4216 MGAGDYYKILKVKRDATDEEVKRAYRSLAMKWHPDKNLEDPLRKEESEAKFKQVAEAYNVLSDPKKRQIYDLYGHYPLNSQRFSKEQGYGIMKEAGVVESSLTCTLLELYKGCKKKLKVSRTVPDEFGMYPVPKSEEKEGGFYLFWGIAILSPLFFLTSISLGALFFCFGRVSKSVEEILKIDIKPGWKKGTKITFPGKGNQEPGGAATDLIFVLDERPHDIFKRDGNDLVVIQKILLVDALIGKTFNLTTLDGRDLTIQVTDIVRPGFELVVPNEGMPISKEPGKKGNLRIKFDVMFPSRLSTQQKSDLRRILLSDVDY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03951 320 SUPERFAMILY Chaperone J-domain 4 83 IPR036869 -
Vimu7g03951 320 PRINTS DnaJ domain signature 46 66 IPR001623 -
Vimu7g03951 320 PRINTS DnaJ domain signature 7 25 IPR001623 -
Vimu7g03951 320 PRINTS DnaJ domain signature 25 40 IPR001623 -
Vimu7g03951 320 PRINTS DnaJ domain signature 66 85 IPR001623 -
Vimu7g03951 320 FunFam DNAJ heat shock family protein 219 314 - -
Vimu7g03951 320 CDD DnaJ 5 63 IPR001623 -
Vimu7g03951 320 SUPERFAMILY HSP40/DnaJ peptide-binding domain 223 308 IPR008971 GO:0006457|GO:0051082
Vimu7g03951 320 Gene3D DnaJ domain 3 100 IPR036869 -
Vimu7g03951 320 Gene3D - 220 300 - -
Vimu7g03951 320 SUPERFAMILY HSP40/DnaJ peptide-binding domain 99 230 IPR008971 GO:0006457|GO:0051082
Vimu7g03951 320 SMART dnaj_3 4 66 IPR001623 -
Vimu7g03951 320 Pfam DnaJ domain 5 71 IPR001623 -
Vimu7g03951 320 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Vimu7g03951 320 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 314 - -
Vimu7g03951 320 CDD DnaJ_C 98 302 - -
Vimu7g03951 320 Pfam DnaJ C terminal domain 99 299 IPR002939 -
Vimu7g03951 320 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Vimu7g03951 320 Gene3D - 101 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03951 Vimu-Chr7 37252477 37254270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03951 6 73 C2H2 Transcription Factor Family AT1G74250 37.681 1.23e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03951 K09510 - gmx:100778440 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03951 7 37252477 37254270 Vimu7g03951 7 37252477 37254270 ECH
Vimu7g03951 7 37252477 37254270 Vimu7g03951 7 37252477 37254270 PCT