Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu7g03939 | ATGAGTCGCAAGCGAGACAGACACTATTTTTCCCGCCACGACGCCGCCTCCAAGCGCCGCCGCCCCTTACCAGAGCCCGTGGAGGAGGAGAGGCCGGCGACGAGGCCCGCGCTGCCTTCTGCGGTGGTCGTGATGGGCCTTCCTCAAGACTGTTCCGTCCTCGATCTCAAGTCTCGCTTCGAGATCTACGGCGCCATCTCCCGCATCCGCATCGACCGCGACGCCGTTGGCTACATTACTTACCGGTCAAAGGAATCTGCCGATGCCGCTATCGCCGCCGGTGTTGACCCCTCCTTCGGAATCACCGTTAGCTCCAAAAAGGTTCAGGTGTTGTGGGCAACAGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGTAATAGCAAGGATAAAGGGCATATGTCAAAACTTGTTCGTGCTGAGGCACCTTTGAGCAAGCGTGGAAGAGGCAATAGACTTGCTTCAGCTATAGGGAACCCCAAACATGGTGAAAATAGCTCCGGTAGCCCAATTTTAGAAGCGCCTTTCAAGGGCCGAGAAATTGTTGCTTATGATGATATCCTCTAA | 564 | 0.555 | MSRKRDRHYFSRHDAASKRRRPLPEPVEEERPATRPALPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRSKESADAAIAAGVDPSFGITVSSKKVQVLWATDPLAMWREGVGNSKDKGHMSKLVRAEAPLSKRGRGNRLASAIGNPKHGENSSGSPILEAPFKGREIVAYDDIL | 187 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu7g03939 | 187 | MobiDBLite | consensus disorder prediction | 7 | 32 | - | - | |
Vimu7g03939 | 187 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 42 | 92 | IPR000504 | GO:0003723 | |
Vimu7g03939 | 187 | CDD | RRM_SF | 42 | 93 | - | - | |
Vimu7g03939 | 187 | SMART | rrm1_1 | 41 | 111 | IPR000504 | GO:0003723 | |
Vimu7g03939 | 187 | PANTHER | GEO13361P1-RELATED | 20 | 135 | - | - | |
Vimu7g03939 | 187 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Vimu7g03939 | 187 | MobiDBLite | consensus disorder prediction | 145 | 170 | - | - | |
Vimu7g03939 | 187 | Gene3D | - | 1 | 117 | IPR012677 | - | |
Vimu7g03939 | 187 | SUPERFAMILY | RNA-binding domain, RBD | 26 | 119 | IPR035979 | GO:0003676 | |
Vimu7g03939 | 187 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 40 | 115 | IPR000504 | GO:0003723 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu7g03939 | 1 | 187 | Homeobox Transcription Factor Family | AT1G27050 | 51.707 | 2.54e-61 | 187 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu7g03939 | - | - | ccaj:109806897 | 306.219 |