Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03938 ATGGCGGGTGGCAAGCTTCATGCTGCTTCAACCATGTCGCTTCTCCTCCAAAACGAAAGACTCCCTTGCTCCTCTGAAGTCCTTGAATCTCTTTGGGCTCACACCTCTAACCCTGCTTCCTTCCAAGGTGATCTCTTCCTTCTCAATTCACCTCACTCTCTTCATGCTCTTTCTGCTACTTCCCTTCCTCGTGAATTTTCACAACCTCGTCTTTTCACTCGCATGGATACATGTTCAAAATCTATGGTTGATTTTGAGAATGTTAGTGGCGGCAGAGTGACGGACAGGCCGTTTTTTCAAGCGTTGGAGAAGGAAGAGAACTGTGATGATGATTATGAGGGGTGTTTCCATCAACCGGGTAAGAAAAGGAGACTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTCGAGAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGGTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACGAAGCAGCTAGAAAAAGATTATGGCACATTGAAAGCTAGTTATGACAGACTCAAAGGTGACTATGAAAGTCTTGTTCAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCTTAGAGATAAAGAGAAGGAGAATTCGGACGACAAGTCATCTCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATTTCAAATTCAACATCTGAAAATGGGACCAAAGTGTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCCCTCTTCATTCGTGGAGCCTGCTGATTCCTCCCATGCTTTTGAACCAGACCACTCAGACTTTTCTCAAGATGAAGAGGATAACCTCAGTGAAAGCCTTTTGACCCTCCCTTGCTTACCAAAGGTTGAAGAAGCCTGCTATGATGACCCTCCTGAAAACCCTTGTAATTTTGGTTTCCATGTTGAGGATCAAACCTTCTGTTTCTGGCCCTATTGA 1089 0.4472 MAGGKLHAASTMSLLLQNERLPCSSEVLESLWAHTSNPASFQGDLFLLNSPHSLHALSATSLPREFSQPRLFTRMDTCSKSMVDFENVSGGRVTDRPFFQALEKEENCDDDYEGCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLVQENDKLKAEVNSLESKLILRDKEKENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDHSDFSQDEEDNLSESLLTLPCLPKVEEACYDDPPENPCNFGFHVEDQTFCFWPY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03938 362 Coils Coil 189 216 - -
Vimu7g03938 362 Pfam Homeodomain 121 174 IPR001356 GO:0003677
Vimu7g03938 362 Pfam Homeobox associated leucine zipper 176 217 IPR003106 GO:0006355|GO:0043565
Vimu7g03938 362 Gene3D - 171 219 - -
Vimu7g03938 362 SUPERFAMILY Homeodomain-like 112 178 IPR009057 -
Vimu7g03938 362 ProSiteProfiles 'Homeobox' domain profile. 116 176 IPR001356 GO:0003677
Vimu7g03938 362 CDD homeodomain 119 177 IPR001356 GO:0003677
Vimu7g03938 362 PRINTS Lambda-repressor HTH signature 147 156 IPR000047 GO:0003677
Vimu7g03938 362 PRINTS Lambda-repressor HTH signature 156 172 IPR000047 GO:0003677
Vimu7g03938 362 MobiDBLite consensus disorder prediction 218 255 - -
Vimu7g03938 362 SMART HOX_1 118 180 IPR001356 GO:0003677
Vimu7g03938 362 MobiDBLite consensus disorder prediction 302 316 - -
Vimu7g03938 362 MobiDBLite consensus disorder prediction 218 236 - -
Vimu7g03938 362 ProSitePatterns 'Homeobox' domain signature. 151 174 IPR017970 GO:0000981|GO:0006355
Vimu7g03938 362 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 103 262 IPR045224 GO:0003700
Vimu7g03938 362 MobiDBLite consensus disorder prediction 273 320 - -
Vimu7g03938 362 Gene3D - 124 170 - -
Vimu7g03938 362 FunFam Homeobox-leucine zipper protein HAT5 114 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03938 Vimu-Chr7 37013942 37015514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03938 79 309 Homeobox Transcription Factor Family AT3G01470 42.918 5.04e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu7g03938 Homeodomain 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03938 - K09338 gmx:547565 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03938 7 37013942 37015514 Vimu7g03938 7 37013942 37015514 ECH
Vimu7g03938 7 37013942 37015514 Vimu7g03938 7 37013942 37015514 PCT