Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03933 ATGCCGATGGACCTGTGTGCCCAAATCCAGAGATCCTTCGACCAACGTTACACCTCCCACGCGCGCCACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCCACATCCCCGGCCACCCTATCGTTTTCGCAAGCCCGGGCTTCCTCAAGCTCACCGGCTACGCGCGCTGCGAGGTCCTTGGCCAGACCGCCGCCATCTTCCAGGGCCCTGGCACTTCCCGGAGGTCCGTCATGGAAATCCGCGAGGCCGTCCGAGAGGAGCGCACCGAGCAGGTCGTTTTGCTCAACTACCGTAAGGACGGCACGCCGTTTTGGATGCTATTCTGCGTCTGTCCCGTGTTCAGCGGCGACGGCGGCGCCGTCGTTCACTTCGTCGCTGTTCAGGTCCCGCTTCTCAAAAAGGACGGCTCCGGCGTCAGGGATTTTGGCTTCGGGTGCTGTCGGAAGGAAGTATGCACTGATTCGTTATCGGAGCTTGGTCGCGTGTGTTCCGTGGAGCAAGTGTTGGAACGTGATGTCATTGAATTGGAGAGGGAAGATCCGTGTGTGGCGAGTGATGAGGAGATGCGAAGTGCCGTCACTGCCATGGACAATATCTTCTCTGTGCTGACCCATTTTAGTGAGGCAACTGGCAGATTAGTGTGTAGGAAGAGGTGCAGCGTTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTTATGGAAGAAGTGAAGTTTTGGGTCGCAACTGTAGGTTTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATGAAAGTTCATTTTGGAATTTTCTTCACATCTCACCCGTTCGTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAATAGAAGACATCAATAAAAATGACGATAGCCAATGTTTGAGTCCAGAGAAAAGGCAGCTTAGTGTGGTTGGTGTAGTGAAGGTTGCAGTGAGGAGTTTATCAATGAGTGCGGGATCTTCAAAGTCGTAG 1068 0.5187 MPMDLCAQIQRSFDQRYTSHARHSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARCEVLGQTAAIFQGPGTSRRSVMEIREAVREERTEQVVLLNYRKDGTPFWMLFCVCPVFSGDGGAVVHFVAVQVPLLKKDGSGVRDFGFGCCRKEVCTDSLSELGRVCSVEQVLERDVIELEREDPCVASDEEMRSAVTAMDNIFSVLTHFSEATGRLVCRKRCSVPDVGLLSTSLIISLGYGRSEVLGRNCRFLGGTDTDTSTLYLIKESIKAEQPCTVRILNYRKDESSFWNFLHISPVRDASGKVAYFVGVQIEDINKNDDSQCLSPEKRQLSVVGVVKVAVRSLSMSAGSSKS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03933 355 SMART pac_2 277 320 IPR001610 -
Vimu7g03933 355 SMART pac_2 94 137 IPR001610 -
Vimu7g03933 355 Gene3D PAS domain 14 136 - -
Vimu7g03933 355 SUPERFAMILY PYP-like sensor domain (PAS domain) 29 130 IPR035965 -
Vimu7g03933 355 Gene3D PAS domain 230 353 - -
Vimu7g03933 355 NCBIfam PAS domain S-box protein 43 125 IPR000014 -
Vimu7g03933 355 NCBIfam PAS domain S-box protein 237 320 IPR000014 -
Vimu7g03933 355 ProSiteProfiles PAS repeat profile. 17 90 IPR000014 -
Vimu7g03933 355 Pfam PAS domain 238 317 IPR000014 -
Vimu7g03933 355 Pfam PAS domain 30 131 IPR000014 -
Vimu7g03933 355 PANTHER PROTEIN TWIN LOV 1 8 239 - -
Vimu7g03933 355 CDD PAS 238 317 IPR000014 -
Vimu7g03933 355 CDD PAS 28 130 IPR000014 -
Vimu7g03933 355 SUPERFAMILY PYP-like sensor domain (PAS domain) 238 313 IPR035965 -
Vimu7g03933 355 ProSiteProfiles PAC domain profile. 274 328 IPR000700 -
Vimu7g03933 355 FunFam Protein TWIN LOV 1 isoform D 31 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03933 Vimu-Chr7 36906278 36909819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03933 224 346 AGC Kinase Gene Family AT5G58140 34.400 4.09e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03933 - - gmx:100785562 591.267