Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03928 ATGGAGGACCCATTTCAGTTATGTATCTTTGAGCGGAGATTACTGAGTTCAGCCCAGGAACTGGTAGAGATGGGTTTGGGTGCTGAGAATGGTAAGGTGGTGGAGCCTTGGGCTGTGTGCAAATCAAAGGGGAGGAAGAAGAAGAAAGGGGATGAGGAAGTGGAAGGGGCTGGGTCTGGTTGTTGGCTTAGGCTCAGGTTTATTGGTAGCTGCATTTCCTCAAGATCCAAGGTCGACACCTCTGTCAGTGGCAGTGGCACCACGGAAAGTAAATCAACTAATGATACTAGTAGAGACCAACCAACAACTCAGGCAGTCTCTTCTACAACCACTAGTAACGCAGAAAGTAATTCATCCACTTCCAAACTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAGTTCTCTTTCAATGATCTTAAGTTAGCTACCAGAAATTTTCGGCCTGAAAGTTTTCTTGGTGAAGGTGGGTTTGGTTGTGTTTTCAAGGGTTGGATTGAAGAAAATGGAACTGCTCCCGTGAAACCTGGCACAGGGCTTACTGTTGCTGTAAAAACCCTCAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTTCTCGGCGATCTAGTTCATCCGAACCTTGTTAAACTTGTAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTTTATGAGTTCATGCCTCGGGGTAGCCTAGAAAATCATCTGTTTAGGATTGAAATTATGCCATATGTAGGATCCCTGCCTCTTCCATGGTCCATTAGAATGAAAATTGCCCTTGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCCGATCGACCAGAGTACAACGCCAAGCTCTCAGACTTTGGTCTTGCCAAAGATGGCCCAGAAGGTGATAAAACCCATGTGTCTACTCGAGTGATGGGAACCTATGGCTATGCAGCACCAGAATATGTCATGACAGGTCATCTTACATCAAAAAGTGATGTGTACAGTTTTGGAGTGGTACTACTTGAGATGTTGACTGGGAGAAGATCCATGGACAAACACAGACCCAATGGTGAACATAACCTTGTGGAATGGGCTCGGCCGCATCTGGGAGAGAGGAGAAGGTTCTACAAGCTGATAGACCCTCGTTTGGAAGGGCACTTTTCGGTGAAAGGTGCTCAGAAAGCTGCCCAACTAGCTGCTCACTGCCTTTGTAGAGATCCAAAAGCAAGGCCTCTGATGAGTGAAGTTGTAGAAGCTTTGAAGCCTTTGCCAAACCTCAAGGACATGGCAAGCTCTTCATATTATTACCAGACGATGCAAGCCGACCGCATCGGAGCGAGCCCGAACACAAGAAACAGTCGAACACAAGGAGCATTGCTCAGCCGCAACGGACAGCAGCAAAGGAGTCTTTCTATACCAAATGGTAGCTATGCATCTCCTTATCACCATCAGTTTCCTCAACCATCCCCAAAGACCAATGGCAAAGCATAG 1491 0.4648 MEDPFQLCIFERRLLSSAQELVEMGLGAENGKVVEPWAVCKSKGRKKKKGDEEVEGAGSGCWLRLRFIGSCISSRSKVDTSVSGSGTTESKSTNDTSRDQPTTQAVSSTTTSNAESNSSTSKLEEELKIASRLRKFSFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRIEIMPYVGSLPLPWSIRMKIALGAAKGLAFLHEEADRPEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYKLIDPRLEGHFSVKGAQKAAQLAAHCLCRDPKARPLMSEVVEALKPLPNLKDMASSSYYYQTMQADRIGASPNTRNSRTQGALLSRNGQQQRSLSIPNGSYASPYHHQFPQPSPKTNGKA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03928 496 ProSiteProfiles Protein kinase domain profile. 148 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03928 496 SUPERFAMILY Protein kinase-like (PK-like) 132 436 IPR011009 -
Vimu7g03928 496 MobiDBLite consensus disorder prediction 445 496 - -
Vimu7g03928 496 MobiDBLite consensus disorder prediction 77 121 - -
Vimu7g03928 496 FunFam Serine/threonine-protein kinase BIK1 115 233 - -
Vimu7g03928 496 PANTHER OS01G0588500 PROTEIN-RELATED 109 423 - -
Vimu7g03928 496 MobiDBLite consensus disorder prediction 77 120 - -
Vimu7g03928 496 ProSitePatterns Protein kinases ATP-binding region signature. 154 186 IPR017441 GO:0005524
Vimu7g03928 496 Pfam Protein kinase domain 151 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03928 496 Gene3D Phosphorylase Kinase; domain 1 106 233 - -
Vimu7g03928 496 Gene3D Transferase(Phosphotransferase) domain 1 234 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03928 Vimu-Chr7 36829115 36832732 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03928 79 436 Glycoside Hydrolase AT3G07070 48.257 3.20e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu7g03928 Pkinase 2.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03928 - - gmx:100305443 838.95