Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03919 ATGACTAAATTACACAACATCTTGATTTTAACCTGTTTGGTAGTGACCATACCTACCTTATATGGCAATGTTTTAGAGGATGAGGAGTATTGGGGGAAGCAAGCTGCATTATTTGATGAGTATTGGAAGAAAAAAGAAGCAACTGCTGAAAAAGAGAACGAGAGAGCTTATATTAATGACCCATTTTCATTCAGCGGCAACGTGACTGATAATATTACTGACCTGATAATTAGTGATGAGAAAGCGGAAAGTAATGGAAGAAGGAATTTGGCAGGAAAGTTAGCAAATAATCGATGCTTGGCAACAAACCCGATTGACAGATGTTGGAGGTGTGACCAGCAATGGGCAAAGAATCGGAAGAAGCTGGCAGATTGTGTGCAAGGTTTTGGCAGAAACACTGTTGGAGGACAGAAAGGTTCGTTTTATGAGGTAACCAGTAACTTAGATAATGACATGTTGAATCCTGTTCCTGGTACCCTTAGGCATGCGGTTACAAGAACTGCACCCTTGTGGATCTATTTTTCTCGTAGCATGACCATTAGGCTGAGCCAGGAGCTGATTGTGACAAGTGACAAGACCATTGATGGAAGAGGAGCTGATGTTTACATTATGAATGGTGCTGGTTTTACCCTCCAATTCGTGAAGAATGTCATCATCCATGGAATCAAAATTTTTGACATCAATTCTGGCACTGGTGGACTTATCAGAGATTCTGAGGCCCACTACGGTCAAAGGACTCAGAGTGATGGTGATGGAATTTCCATCTTTGGCTCTAGCCATGTTTGGATCGACCATGTTTCCATGAGAAACTGCAAAGATGGATTGATCGATGCCATTATGGGTTCTACTGCCATTACCATCTCCAATTGCCACTTCACAGACCACAATGAGGTGATGCTGTTTGGTGCGAGTGACAGCTATGATGGTGATAAGCTAATGCAGATCACACTGTTATTCAACCACTTTGGTAAGAGATTAATTCAAAGAATGCCAAGATGCAGGTTTGGTTTTTTCCATGTGGTTAACAACGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACAATTATTAGTGAGGGCAACCGATTCACAGCCCCCGACGACAATAATGCTAAAGAGGTAACAAAGAGGACCTACGCAACAGAAGAAGAGTGGAAAAATTGGCAATGGAGATCAATCAGGGATGAGCTGGTGAATGGAGCTTATTTCAGAGAAAGTGGGCCCATTTTAAATAACAGACCCTTTACAAAGAAGGACATGGTGTCCTCCAGGCCTGGTTCGTATGTAGTAAGGCTCAGTCGCTACGCTGGGGCCCTAAGATGCGTTGAGGGCAACCCTTGTTAG 1359 0.4297 MTKLHNILILTCLVVTIPTLYGNVLEDEEYWGKQAALFDEYWKKKEATAEKENERAYINDPFSFSGNVTDNITDLIISDEKAESNGRRNLAGKLANNRCLATNPIDRCWRCDQQWAKNRKKLADCVQGFGRNTVGGQKGSFYEVTSNLDNDMLNPVPGTLRHAVTRTAPLWIYFSRSMTIRLSQELIVTSDKTIDGRGADVYIMNGAGFTLQFVKNVIIHGIKIFDINSGTGGLIRDSEAHYGQRTQSDGDGISIFGSSHVWIDHVSMRNCKDGLIDAIMGSTAITISNCHFTDHNEVMLFGASDSYDGDKLMQITLLFNHFGKRLIQRMPRCRFGFFHVVNNDYTHWEMYAIGGSKHPTIISEGNRFTAPDDNNAKEVTKRTYATEEEWKNWQWRSIRDELVNGAYFRESGPILNNRPFTKKDMVSSRPGSYVVRLSRYAGALRCVEGNPC 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03919 452 Pfam Pectate lyase 186 368 IPR002022 -
Vimu7g03919 452 SUPERFAMILY Pectin lyase-like 103 443 IPR011050 -
Vimu7g03919 452 PANTHER PECTATE LYASE 18-RELATED 71 450 IPR045032 GO:0030570
Vimu7g03919 452 Gene3D - 102 445 IPR012334 -
Vimu7g03919 452 Pfam Pectate lyase, N terminus 37 90 IPR007524 GO:0030570
Vimu7g03919 452 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Vimu7g03919 452 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Vimu7g03919 452 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Vimu7g03919 452 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Vimu7g03919 452 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Vimu7g03919 452 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Vimu7g03919 452 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Vimu7g03919 452 PRINTS Pollen allergen Amb family signature 423 446 IPR018082 -
Vimu7g03919 452 SMART amb_all 177 374 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03919 Vimu-Chr7 36727678 36729414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03919 7 452 Polysaccharide Lyase AT1G14420 54.367 1.04e-176 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03919 K01728 - gmx:100796307 701.434