Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03916 ATGTCCCACATTGTTCACTCCCTCCCGTTAAAGCTCCTCTCACTACCCTTCCACTCTTTTGTTCCTCCCAAATTCATTGTTCCTTTGAACAAGAACTTTTCTTTCACTTTTCCAACTTCACTCTCTGTCAGATGCAACCACTCCAACATCGTGGAACCCTTCCCACCACTGCCTCAGTATCCTTCGGTTGCAGAATTTCCGCAAAGGGTGTATGCAGATTACTCTGTTTATACAGCGAAGGGTGTGCTCACCTTGACTCCTAAACCTCCGGAATTTGAATCAAAAGCTTCTGGGGCGTTTGGGGTGTCTAGGGAAGGTTATATGTTGCTCCAGTTTGCTCCTTCTGTTGGTACCGAAGAATCCATATATGATTGGAACCAAAAGCAGTTTGAGTGGTTGCTTAGGGGCTACATTGGTATGCCATCTTTTTTGTGTTTCACTTTGGGGAAACTTTAG 456 0.4496 MSHIVHSLPLKLLSLPFHSFVPPKFIVPLNKNFSFTFPTSLSVRCNHSNIVEPFPPLPQYPSVAEFPQRVYADYSVYTAKGVLTLTPKPPEFESKASGAFGVSREGYMLLQFAPSVGTEESIYDWNQKQFEWLLRGYIGMPSFLCFTLGKL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03916 151 Gene3D Transcriptional Coactivator Pc4; Chain A 64 135 IPR009044 GO:0003677|GO:0006355
Vimu7g03916 151 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 62 130 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vimu7g03916 151 Pfam Whirly transcription factor 76 130 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vimu7g03916 151 SUPERFAMILY ssDNA-binding transcriptional regulator domain 68 132 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03916 Vimu-Chr7 36698866 36700465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03916 42 129 Whirly Transcription Factor Family AT1G14410 42.857 1.85e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vimu7g03916 Whirly 3.5e-15 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03916 K26559 - var:108345276 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03916 7 36698866 36700465 Vimu7g03916 7 36698866 36700465 ECH
Vimu7g03916 7 36698866 36700465 Vimu7g03915 7 36692945 36696493 PCT