Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03915 ATGATGAATGTAGCAAGAGCCACTGATATGGACTTTGTGAATAAGAACAGAGGATGGCATGGGAAAGAAGAAACACTTACGAGAGGCTATTCGAGTTACAAGACTAGTTCAAATATCTCAGGTCGCATTGCTCCTAGAAACCATGGGACTAGAGAAGGGGCTAATGGGATTGGTCCAAACACAAAAGGAAAATCAGGTGAACATAATAGAAGTGGGCCTATAGATAGGGGAACAAGGCATTTAGCCTATCGGGACTTGTTGGATAGGCGAAAGAGAGGATGGAATGTGATGACAAGAAATGCATATGAGAGAGAAGAGGGAGACACAGATGGTGAGCGTAGTGCCTTGAGTTTGCTCAATCTTGGAGCTAAAGAAGTAGAGTTGCCTAGAACTCTTAAATTTGAAGGAAAGGTACATGAGTTGCATCTGTTTATTTTGATCAATAGTGAAGCATCACATAACTTCATTTCTAAAAGATTGGTTGAAGCAATGGGTTGGCCATGGGAGACCATCATTGATGGGAGATGGGCACAAGTCAAAAACGAGAAGGAAGACAGGGGGAGTTTTGGCCGAACGGTGGGGAAGAGAGGCCGAACGGTAGCTGAATGGAGAGGAGAAGACAGGAGAGGAGTAGGCCGAACGGTATTCTCACTTTCTGTAAGTGAAATGGGGACTCTAATTAGCCTTGGTGCAATGGAGTCTTGGGAATTTTCTCGTAAGACTGCTAAGGCAAAAAGCAATGGAATTGAAGTTAGAAAAGTTTTGAAAGTGGAGCCACTTCTGGATGCTACTGGTCACTCATTTAGCTTAAGTGTTTATAAAAAACCTGCGAACATGGAGGAAATTGAGGAAAACATATATCTCCCTATTACAAGGGCGCAGCTAGCAGTTTTAAGGTCAATTTTCAATTATATCGTGCCGTACCTTCTAGGTTGGAATGCATTTGCAAGCACCATAAAGGCAGAGGTATATAGTCAAATGAACAGTGCCAACCCCAGATACAATGCAAATAATGAATGGAACAGATAG 1029 0.4257 MMNVARATDMDFVNKNRGWHGKEETLTRGYSSYKTSSNISGRIAPRNHGTREGANGIGPNTKGKSGEHNRSGPIDRGTRHLAYRDLLDRRKRGWNVMTRNAYEREEGDTDGERSALSLLNLGAKEVELPRTLKFEGKVHELHLFILINSEASHNFISKRLVEAMGWPWETIIDGRWAQVKNEKEDRGSFGRTVGKRGRTVAEWRGEDRRGVGRTVFSLSVSEMGTLISLGAMESWEFSRKTAKAKSNGIEVRKVLKVEPLLDATGHSFSLSVYKKPANMEEIEENIYLPITRAQLAVLRSIFNYIVPYLLGWNAFASTIKAEVYSQMNSANPRYNANNEWNR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03915 342 Gene3D Transcriptional Coactivator Pc4; Chain A 182 330 IPR009044 GO:0003677|GO:0006355
Vimu7g03915 342 Pfam Whirly transcription factor 213 301 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vimu7g03915 342 SUPERFAMILY ssDNA-binding transcriptional regulator domain 213 342 IPR009044 GO:0003677|GO:0006355
Vimu7g03915 342 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 213 342 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vimu7g03915 342 MobiDBLite consensus disorder prediction 32 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03915 Vimu-Chr7 36692945 36696493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03915 213 342 Whirly Transcription Factor Family AT1G14410 56.154 1.19e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vimu7g03915 Whirly 9.4e-20 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03915 K26559 - var:108322733 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03915 7 36692945 36696493 Vimu7g03915 7 36692945 36696493 ECH
Vimu7g03916 7 36698866 36700465 Vimu7g03915 7 36692945 36696493 PCT