Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03914 ATGGTATTGCCTGTTCACTTTCTTGTTGTGTGTCATCATTATTGCGTGCAGGATCAAAAGCTTGAATCAGCTAAGAAGGTGTTGGAAGAGGCCAGAGAAGAAAACAAGATGTTGAAGTTCTTGGACATTTTACAACAAGGAAATTCTGCAAATGCTAAAGGTGTAACTAGCCATGAGGAAAGTGAAGAAAGTGAACTTGTGTCGCTTTCTCTTGGGATATCAGTGAAAGGAAAGACTAAGGGTGAGAGGAAGCATTGCAAGAGAGAAGATGAAGGTATGGATAAAGGACTCAGACTTGGGTTAGATATGAATTTGGATCCTGTAGATCATGCTGAAGCTGCAAATGTTTCCAGCACTGCAAGTAGTTCTGGTGAGGGAGGGAAGGAAGAGGAACCAAGTGAGATGTGGCCACCCAGTAAAGTTTTCAAGGCAATGAAAAATGTTGATAAAAGTGAAGCTTCTCAAAATGATCAGCCCAAGAAAACTAGGGTTTCCATCAGAGCCAGATGTGATACTCAAACGATGAATGATGGATGTCAATGGAGAAAATATGGACAGAAAATGGCAAAAGGAAATCCATGTCCCCGAGCTTACTATCGATGCACTGTTTCTCCATTGTGTCCTGTAAGAAAACAGGTGCAAAGATGTGCTGAAGACATGTCCATATTGATCACAACCTATGAAGGAATTCACAATCATCCACTTCCTATATCAGCGACTGCAATGGCATGCACAACTTCTGCTGCAGCTTCCATGCTTCAATCTCCCTCATTGAGTTCACAGCATGGACATGGACTAGTCAATTCAGCTATATCCTCCATTACCAATTTCACTGCTCCTAATTACAACCTTGATAATGCTCTAAACTTCTCCACATACCATGTTTCAAGACCACATCAATTCTACTTTCCAAACTCATCTATTTCAAGCTTGAATTCTCACCCCACAATCACTTTGGACCTTACAGCACCCCCAACATCCTCAAACCTTAATTTTTCCTCAGGTTTCTCTCCTCTACAATCTAGCATGTCTCCATCACCTTGGAGCAGTTACAGTAGTTACTTCAACTCAGGACCACTGACTCATAACAGAAACCATGGTGATTACTTGCTAAACACTGGACATCAAAATCAGCCATATCTTGAGCATCTCCATCACCCTATTTGCACGAGCAACAATAACTTTTCTCAGCGGTCTTTGCCGGATTCCATTATTGCTGCAACCAAGGCAATCACAAGCAATCCAAAATTTCAATCAGTGTTGGCAACTGCTCTCACAACATATGTTGGCAATGAAGCTGGTGGTGGTAGGTTAAGAGCAAACCATGTTCTTGAGAATGCAGAACTGAACTTAAAGCTATGTAGTGAAAACACCATAGGATGTGCATCATCAAGGTACTTGAACGTGTCTTCTTCTGCTCTTAACCCTCAACAAGGAAACTCAAGTATATTTCCACTACCATCATTACCTGAGCAATAA 1479 0.4145 MVLPVHFLVVCHHYCVQDQKLESAKKVLEEAREENKMLKFLDILQQGNSANAKGVTSHEESEESELVSLSLGISVKGKTKGERKHCKREDEGMDKGLRLGLDMNLDPVDHAEAANVSSTASSSGEGGKEEEPSEMWPPSKVFKAMKNVDKSEASQNDQPKKTRVSIRARCDTQTMNDGCQWRKYGQKMAKGNPCPRAYYRCTVSPLCPVRKQVQRCAEDMSILITTYEGIHNHPLPISATAMACTTSAAASMLQSPSLSSQHGHGLVNSAISSITNFTAPNYNLDNALNFSTYHVSRPHQFYFPNSSISSLNSHPTITLDLTAPPTSSNLNFSSGFSPLQSSMSPSPWSSYSSYFNSGPLTHNRNHGDYLLNTGHQNQPYLEHLHHPICTSNNNFSQRSLPDSIIAATKAITSNPKFQSVLATALTTYVGNEAGGGRLRANHVLENAELNLKLCSENTIGCASSRYLNVSSSALNPQQGNSSIFPLPSLPEQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03914 492 MobiDBLite consensus disorder prediction 148 167 - -
Vimu7g03914 492 ProSiteProfiles WRKY domain profile. 170 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g03914 492 SUPERFAMILY WRKY DNA-binding domain 168 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g03914 492 Pfam WRKY DNA -binding domain 176 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g03914 492 Coils Coil 21 41 - -
Vimu7g03914 492 MobiDBLite consensus disorder prediction 153 167 - -
Vimu7g03914 492 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 20 432 IPR044810 GO:0003700
Vimu7g03914 492 Gene3D WRKY domain 160 237 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g03914 492 SMART WRKY_cls 175 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g03914 492 MobiDBLite consensus disorder prediction 113 139 - -
Vimu7g03914 492 FunFam probable WRKY transcription factor 31 160 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03914 Vimu-Chr7 36665593 36668675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03914 22 462 WRKY Transcription Factor Family AT5G15130 37.376 1.13e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu7g03914 WRKY 1.5e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03914 - - pvu:PHAVU_002G089700g 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03914 7 36665593 36668675 Vimu7g03914 7 36665593 36668675 ECH
Vimu7g03914 7 36665593 36668675 Vimu7g00769 7 7679390 7683420 ECH
Vimu7g03914 7 36665593 36668675 Vimu6g00840 6 9298238 9300738 ECH
Vimu7g03914 7 36665593 36668675 Vimu7g00769 7 7679390 7683420 PCT
Vimu7g01595 7 14978007 14981091 Vimu7g03914 7 36665593 36668675 PCT