Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03910 ATGGGGAAAGGAAGAAGTCCTGGCAAATGGTTCAAGAACTTACTCTTGGGGAAGAAATCGTCGGCAAAGTCTACTTCATCGAAGAAGAATGATATTTTTAAAACTTCAAGTAATAAGGATGTGGTGTTGTCTTCTGAGGTACCTGTGTCTGATTCACCTGTCAATTCTCTGGTGATATCCCCGCCGATATCTGGTGCTAATGATACCAAAGGAATGCTTTCAGAAAAGGAGGTAGTTAGTAAATCTTCAAATGATAACAATGTTCTTTCAACTGGAGATGAAGAGGCCAAGGTGAAGGATGTTGCTAATTTTGAAACTCAAGAGGATCCTGAGAAACTTCAGCTTACAGAAGCAGCTATAAAAGTTCAGGCCGCTTGTAGAAGCTATCTGGCTCGTCGAACATTTCAAACACTCAAAGGTGCCATACAACTACAAGCTCTCATTCGTGGTCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGACGTTCTGATATTGGCCATGCTGTCCAGAAGATTTGTAAGGTAAAGGATACTCATTGTTCAAATTCTATTTTGGTAGTTTCATCAGCACGGGAAGAGAAGGTGTCAGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCACTCACCAGTGATCCAGGAGAACCTAACTTTGGTTGGAAGTGGCTTGAATATTGGACACAGTCACACTTTTGGGCACCTCATCCTGTATTGAAAAAGAAATCTGACTCACTGTCTGATGAGAAAAATGGCAGTTCCCAGACAGTTCAAAGGGGACAAGTTAAAAGAACTACTAGAAAATCTCCTGCCGTGAAAGGTGACAATGGCTCTGTTTTAGCAGCTAACAGATCTAAGCAGCGTCCAAAAAAGGATTCAAGCCATCCATTGCCTTCAGCTCAAGAACACCCACAAAAAGAAACTGAAAAAAGTAGTCTTGAGAAAAAACATGCACATAATGTTTCAAATGGATCTGAGGTTGTTAACGAAAAAAGGAAAAACAGCAGTAGAAAGATTTTGGATCACAGTGTCACTGATGTTTTAGAGCAGGTCCCAAATGCCTCTTCAGAGAAAATGGAAGATTTGACGGTGGCAAAGTCAGAAGAGTCTGATCCTGGGAAGGGTCATGCACAGCCAGCAAAAGATGAGAATTGTAATGAGCCACATAATGATCCTATTTCTGTTTCAAGGACTAGTGTGAAGAAGGGTGAAAATGAAAAAAATCAAGGAGTTGGGGAGGATCAGAATGCTGGTGATGATAATTGTATCAGTAACAATTGCCAGAGAAGAGCTTCACTACCTGCAAACTTTAATGATCAAGATGGTGAGGTATATGCCACTCCTGTCACTCCAAGACTGCCTAGTTATATGGCTCCTACCGAATCTGCAAAGGCCAAGCTAAGAGGACAAAACTCCCCAAGATTTGCTACTGATTTGGTAGAAAAAAGCAGTACAACCAGGCGGCATTCACTTTCATCCTCACTAAATGGAAGGTCTGGTTCATTTTCCCCTAGAGCTGAAAGGCTGATGGCCGTGAGTGGCAGAGGAGTGATAAAGTCTGATAGATCTCTGTCATCTTCAAGAGATGGAACTGCAGAAGTGAAAGCTAAGGTTGCTGCTAATGAAGTGGTCAGGGGAATTCAAGGGGACAACTGA 1731 0.4177 MGKGRSPGKWFKNLLLGKKSSAKSTSSKKNDIFKTSSNKDVVLSSEVPVSDSPVNSLVISPPISGANDTKGMLSEKEVVSKSSNDNNVLSTGDEEAKVKDVANFETQEDPEKLQLTEAAIKVQAACRSYLARRTFQTLKGAIQLQALIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSDIGHAVQKICKVKDTHCSNSILVVSSAREEKVSENVFVCKLLASSPYAVPLSLTSDPGEPNFGWKWLEYWTQSHFWAPHPVLKKKSDSLSDEKNGSSQTVQRGQVKRTTRKSPAVKGDNGSVLAANRSKQRPKKDSSHPLPSAQEHPQKETEKSSLEKKHAHNVSNGSEVVNEKRKNSSRKILDHSVTDVLEQVPNASSEKMEDLTVAKSEESDPGKGHAQPAKDENCNEPHNDPISVSRTSVKKGENEKNQGVGEDQNAGDDNCISNNCQRRASLPANFNDQDGEVYATPVTPRLPSYMAPTESAKAKLRGQNSPRFATDLVEKSSTTRRHSLSSSLNGRSGSFSPRAERLMAVSGRGVIKSDRSLSSSRDGTAEVKAKVAANEVVRGIQGDN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03910 576 SMART iq_5 137 158 IPR000048 GO:0005515
Vimu7g03910 576 SMART iq_5 162 184 IPR000048 GO:0005515
Vimu7g03910 576 SMART iq_5 114 136 IPR000048 GO:0005515
Vimu7g03910 576 MobiDBLite consensus disorder prediction 274 290 - -
Vimu7g03910 576 PANTHER IQ-DOMAIN 5-RELATED 1 523 - -
Vimu7g03910 576 MobiDBLite consensus disorder prediction 355 369 - -
Vimu7g03910 576 Gene3D - 113 162 - -
Vimu7g03910 576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 181 IPR027417 -
Vimu7g03910 576 MobiDBLite consensus disorder prediction 501 526 - -
Vimu7g03910 576 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Vimu7g03910 576 MobiDBLite consensus disorder prediction 386 413 - -
Vimu7g03910 576 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Vimu7g03910 576 MobiDBLite consensus disorder prediction 435 460 - -
Vimu7g03910 576 Pfam Protein of unknown function (DUF4005) 464 545 IPR025064 -
Vimu7g03910 576 MobiDBLite consensus disorder prediction 310 346 - -
Vimu7g03910 576 MobiDBLite consensus disorder prediction 267 527 - -
Vimu7g03910 576 Pfam IQ calmodulin-binding motif 165 181 IPR000048 GO:0005515
Vimu7g03910 576 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Vimu7g03910 576 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03910 Vimu-Chr7 36639633 36645222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03910 4 556 IQD Protein Family AT1G14380 36.678 1.04e-76 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03910 - - gmx:100800548 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03910 7 36639633 36645222 Vimu7g03910 7 36639633 36645222 ECH
Vimu7g03910 7 36639633 36645222 Vimu7g00774 7 7706716 7713876 ECH
Vimu7g03910 7 36639633 36645222 Vimu10g01003 10 9211260 9218586 ECH
Vimu7g03910 7 36639633 36645222 Vimu7g00774 7 7706716 7713876 PCT