Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03904 ATGGAAGAGATAAACAATGATGCTGAGAAACTTGATGAAGTTATGCTACCTGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGGAAGATCCAGCAACGCCCTTTCACTATTGAGCTCATCAAACAGCTTGATATCTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCGACCACAGGAGAGAAAGAGTGGTATTTCTATTGTCCCAGGGATAGAAAATACAGAAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCAATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCTCTGGTTTTTTACAAGGGTAGAGCTGCCAAAGGGGTTAAAACTGATTGGATGATGCATGAGTTCAGGCTACCTTCTCTGACAGACTCACTGTCCCCAAAGTACATAGACAAGAACATTCCTGCTAATGAATCATGGGCTATTTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTTTATCTCAGTCTTGGGTTTCTTCCCTCCCTGAAACAAGAACCTCTGATCATATCCAAACCAAAGATCAAAACAGCATGCAGTTTTGTTCAGACATATCGTTTACAAAGAAAACTACCTTAGCCAGTCATTACTGTACTAACAATTACAATGACGCACAACCTTTGACCCCTAATAGTAGTACCACACTTTGTCCCTTAGATGCTGCCTCATACAAATCCATCATCAACCCATTGCTTTACAAAGCATTTGATCATTTTCCCATTTCAAATGGAGACCTAAGCACGAGCTTTCTGTTCTCATCTCCTTTTGAAACGTCATCAGATGGTAATACTAATGCTAAATCTACCATGGACGTTTCTTCCATGTTGTTGAACATGTCATCCTCCGTGGTTGGAGATTTCAACAAGACTTCAGAGGATAATACAAATGCAACTACAAGCTTTGGTGGGTTGCAAGAGCATGGCTACCCAATACCATTTCTACGTGAGATGCAAAGCACATTTGGTGAACAACAATATGATAATCTTAATGCATTGGTAAAGGGTCCTAATGTGAATATGCCTCGTGTTGATGACCACGATTTGGAAACCGTACGATCCATAGGGTTTCCATTCAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTTTCCTTGTGATCTGCCATCTACTTATTCCACAACTAAGTGCTATACTTAG 1254 0.4147 MEEINNDAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPFTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKYIDKNIPANESWAICRIFKKTNATAQRALSQSWVSSLPETRTSDHIQTKDQNSMQFCSDISFTKKTTLASHYCTNNYNDAQPLTPNSSTTLCPLDAASYKSIINPLLYKAFDHFPISNGDLSTSFLFSSPFETSSDGNTNAKSTMDVSSMLLNMSSSVVGDFNKTSEDNTNATTSFGGLQEHGYPIPFLREMQSTFGEQQYDNLNALVKGPNVNMPRVDDHDLETVRSIGFPFNIGDAWKSNLLWDTSSFPCDLPSTYSTTKCYT 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03904 417 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Vimu7g03904 417 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 244 - -
Vimu7g03904 417 Gene3D NAC domain 24 177 IPR036093 GO:0003677|GO:0006355
Vimu7g03904 417 ProSiteProfiles NAC domain profile. 15 172 IPR003441 GO:0003677|GO:0006355
Vimu7g03904 417 FunFam NAC domain-containing protein 35 24 175 - -
Vimu7g03904 417 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03904 Vimu-Chr7 36520562 36522242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03904 1 314 NAC Transcription Factor Family AT1G26870 56.061 2.08e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu7g03904 NAM 1.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03904 - - gmx:100783995 685.641