Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03886 ATGGAATTGGAGGCTGATCATCAAAATGGGATCCGAACCAGACCCAATTTCCCTCTGCAGCTGTTAGAGAAAAAGGACGTTGATGACGTCACAGAACAACCTTGTTCCACCACTACCAGGGACAGCGTCGTAACTGCAACTACTATTACTAAGCAGTCCAAGAAGCCTCCGCCAAAGAGAACTTCCACCAAGGACCGCCACACCAAGGTCGATGGCCGAGGCCGCCGGATCCGCATGCCGGCCGCCTGTGCTGCCAGAGTCTTTCAGCTAACGCGTGAGCTGGGACACAAGTCTGACGGAGAGACCATAGAATGGCTCCTTCAGCAGGCCGAGCCTGCGGTCATCGCTGCCACCGGCACCGGCACCATTCCCGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGCTCCGGCTCCACCATGTCGGCGCCTTCGCACTACTTTCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACCACTACAGCTGCGGCGGCGGCGGCGGCGCAGCTAAGGAACCGCGCAGAGTGGGACCGGAGCATGAGCATGGTGATGGAAGATTCTCGTAGGAGCATGTTGGAGAACACTTCTTCGATCTCCGCAATTTTGAATTTTAACCCTATGGGTAACATCAATGTAATTCAGCAAGCGAAACAAGAGCTTCGAGAAGAATCCGGTGGCGGTCTTGAATCGGTTGCTTCGGATTCTGACGGAAGCTTAGGGAGAAAGAGAAGGCCAGAGCAAGAACTATCACAAATGGGAAGCTATTTGATACAATCGAGCACAGGGTCGCTTCCATCGAGCCACGCTTCCAATACGGCGGCGTTTTGGATGGTGGCAGGTCACGGTAACCAATCCATGAGCGGTGGTGGCGGTGGCGGCAGCGGCAATGGTAACGATAATCCCATTTGGGCAATTCCCTCCGTTGGGAACAGTGGGGTGTATAGAGGAGGTATGTCTCCCCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCGATGCCCCTTATGCCCGGTGGTCAGCTGGGTTCTGGTATGGTTGGTGGAGGAGGTGGCGGCGAAAGTAACTTAGGCATGCTTGCAGCCCTTAATGCCTACAGACAGATTCCGGCGAACGGCGTCTCGGAGTCTCCAGGAAGCGCCGGACAACCTCACGGCGGAGATGATGGACGTGACTCAACCAGTCAACATTCCTGA 1197 0.5514 MELEADHQNGIRTRPNFPLQLLEKKDVDDVTEQPCSTTTRDSVVTATTITKQSKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTTTAAAAAAAQLRNRAEWDRSMSMVMEDSRRSMLENTSSISAILNFNPMGNINVIQQAKQELREESGGGLESVASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPSSHASNTAAFWMVAGHGNQSMSGGGGGGSGNGNDNPIWAIPSVGNSGVYRGGMSPPGGIHFMNFASPMPLMPGGQLGSGMVGGGGGGESNLGMLAALNAYRQIPANGVSESPGSAGQPHGGDDGRDSTSQHS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03886 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 40 385 IPR005333 GO:0003700
Vimu7g03886 398 MobiDBLite consensus disorder prediction 47 71 - -
Vimu7g03886 398 MobiDBLite consensus disorder prediction 222 251 - -
Vimu7g03886 398 MobiDBLite consensus disorder prediction 371 398 - -
Vimu7g03886 398 Pfam TCP family transcription factor 61 186 IPR017887 -
Vimu7g03886 398 ProSiteProfiles TCP domain profile. 63 117 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03886 Vimu-Chr7 36203702 36204964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03886 1 398 TCP Transcription Factor Family AT1G69690 40.191 7.59e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vimu7g03886 TCP 1.9e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03886 - - vum:124821453 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03886 7 36203702 36204964 Vimu10g01026 10 9474694 9476186 ECH
Vimu7g03886 7 36203702 36204964 Vimu7g03886 7 36203702 36204964 ECH