Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03881 ATGGCAACAGCCAGGACCGTTAAGGATGTTTCGCCACATGATTTTGTGAAGGCTTACGCATCCCACCTCAAGCGTTCTGGCAAGGTGATTAACTATACCTTTTTGGATGTAATTTGTGGTGGAGACTGTGCCTCAATGGCAAGAAAGATCTATTTGAGAGGTGGTCTTGGTGTTGGTGCTTTCCAGAGGATCTATGGTGGAAGCAAGAGGAATGGAAGCCGCTCACCACATTTCTGCAAGAGCAGTGGTGCTATTGCCAGACACATTCTGCAACAGTTGGAGATCATGAATATTGTTGAGATTGATACTAAAGGGTAA 318 0.4528 MATARTVKDVSPHDFVKAYASHLKRSGKVINYTFLDVICGGDCASMARKIYLRGGLGVGAFQRIYGGSKRNGSRSPHFCKSSGAIARHILQQLEIMNIVEIDTKG 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03881 105 Gene3D - 39 105 IPR036388 -
Vimu7g03881 105 PANTHER 40S RIBOSOMAL PROTEIN S19 2 105 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vimu7g03881 105 SUPERFAMILY "Winged helix" DNA-binding domain 6 104 IPR036390 -
Vimu7g03881 105 Pfam Ribosomal protein S19e 43 102 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vimu7g03881 105 SMART Ribosomal_S19e_2 6 104 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vimu7g03881 105 Gene3D - 1 38 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03881 Vimu-Chr7 36014806 36016073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03881 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 70.833 1.52e-56 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03881 K02966 - ath:AT3G02080 164.851