Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03871 ATGGAGAATGTGTGTGATGTTAATCACTTGGATGTTGATGTTCTTTTGCCTCCTCGTAAGCGTCTTCTAGCTGGATTGAAAAAACAGAGCTCGGATGGTTATGTTGCAGCATCTCCATCGCGGGTTGTTGCTTCCTGTGCTACAGTTTCCAAGGCTGTTTCCTCTTCACCTTCTTCCTATTCCGTTGAATTTGAAGCCAGGCTTAAGAATTTGTTGAGTTCTCATCCCACTAACCTTAACCTTACCTCTGAGGAGGTCGTGGAGGCTTCGAAGGCTGAAGCAGTGGCTGCAGTGAAAGCTGCAAAGGCTGCAGCTGAGGAAAAGGTCGAGATTGCCGCAAAAGCAGTTGCAGCTGCCAAGAGAGCTTTGGATTTGATCGCTTCTTTCTCCGAAGAGGCAATGGGTAGTAGCAAGGAAAGAAATCCGAAGAAGAACAAGCTTAAGAAGCATCTCCCAGTTCATTTCTTGTACAAAAAATACCAACAAATTGAAAATTGTGGGACAGATGAAGAATTGGCCCAGAAGTTGCATCGGGCTATGAACAGATGCAAATTTGGTGATAAGTGCCATTTTGCTCATGGTGAATGGGAACTTGGTAAACATATTTCTCCCTCAATTAATGATCATCGATCTTTGGGACCTTCATCAGCTGGTCGAATGGCTGTTCGAATTGAGCCTCCTCCCTTGGCTGGGAGCTTTGGTGCCATTTCTACTGCCAAGATCAGTGTAGAAGCTTCTCTGGCAGGAGCTATCATTGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCGAAACTTTCAATCTGA 819 0.4567 MENVCDVNHLDVDVLLPPRKRLLAGLKKQSSDGYVAASPSRVVASCATVSKAVSSSPSSYSVEFEARLKNLLSSHPTNLNLTSEEVVEASKAEAVAAVKAAKAAAEEKVEIAAKAVAAAKRALDLIASFSEEAMGSSKERNPKKNKLKKHLPVHFLYKKYQQIENCGTDEELAQKLHRAMNRCKFGDKCHFAHGEWELGKHISPSINDHRSLGPSSAGRMAVRIEPPPLAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSI 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03871 272 Pfam KH domain 239 271 IPR004088 GO:0003723
Vimu7g03871 272 ProSiteProfiles Type-1 KH domain profile. 236 272 - -
Vimu7g03871 272 PANTHER OS06G0728500 PROTEIN 1 182 - -
Vimu7g03871 272 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 225 272 IPR036612 GO:0003723
Vimu7g03871 272 Gene3D - 170 200 - -
Vimu7g03871 272 Coils Coil 102 122 - -
Vimu7g03871 272 Gene3D K Homology domain, type 1 237 272 IPR036612 GO:0003723
Vimu7g03871 272 ProSiteProfiles Zinc finger C3H1-type profile. 167 196 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03871 Vimu-Chr7 35648946 35651884 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu7g03871 KH_1 2.8e-06 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03871 - - gmx:100784719 199.519