Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03870 ATGTCCTCCAGAAGATCTCGTTCCAGACAATCCGGTGCTTCCGCTGAGATCACGGATGCGCAAATCACCGATCTCGTTTCCAAGTTGCAACAACTTATCCCTGAGCTTCGCGCCAGGCGCTCCGACAAGGTTTCGGCTGCTAAGGTATTGCAGGAGACATGCAACTATATAAAGAACTTGCACAGAGAGGTTGACGATCTAAGCGATCGATTATCAGAGCTTCTGGCTAACACAGACTCCAACAACACCAACGCGAAACACTACCATCGGATCCATGTGAAGCAGTTGTTGATTAGTTTTAATTATGTGGCGCTTTGTAGTAGTAACCAATTGTGGTCAGCTTCTATAGCTGTAAATAAAATGGACTACATCATGATGTCGAATCATTTTTCAAATTTGGAGGCTGCAATGCTTGAGTTTAATCTTAGTAATCTATCTTATGAGAGAAATTCTGCAGTTTCGTGTGGACCCATTAGAAGGGTCAAGGTTGAAGCTGACAGTGCCTATAACATATTCAAAGGGAGGTTGTCTGCGCACACATTGATTGATCATATTCTGCACAAAGAAGGTGTTTCTGGTTTGATCACGTTGGGGCTTGGCGTCCTTGAAGACTGCTGCATATTTTCTGGCTTGGCATCCGTGAAGACTGTTGTTTTGGACCTGTTGATTACAGGGTATAGTTCACTTTGA 690 0.4391 MSSRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNNTNAKHYHRIHVKQLLISFNYVALCSSNQLWSASIAVNKMDYIMMSNHFSNLEAAMLEFNLSNLSYERNSAVSCGPIRRVKVEADSAYNIFKGRLSAHTLIDHILHKEGVSGLITLGLGVLEDCCIFSGLASVKTVVLDLLITGYSSL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03870 229 CDD bHLH_AtPRE_like 17 77 - -
Vimu7g03870 229 FunFam Transcription factor ILI6 7 87 - -
Vimu7g03870 229 Gene3D - 20 90 IPR036638 GO:0046983
Vimu7g03870 229 Coils Coil 57 77 - -
Vimu7g03870 229 PANTHER TRANSCRIPTION FACTOR PRE 1 86 IPR044293 GO:0006355|GO:0040008|GO:0046983
Vimu7g03870 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 79 IPR036638 GO:0046983
Vimu7g03870 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Vimu7g03870 229 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03870 Vimu-Chr7 35628236 35633185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03870 1 80 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.136 2.49e-29 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g03870 HLH 4.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03870 - - gmx:100804830 149.443