Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03865 ATGTGGCCTAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACTCCTCACCATGATGATCATCAACCTCCACCTTCGCTCACGTCAATTCTACCCTCCTGCACACCTCAAGAATATCATGGGGGAGTGAACTTTCTGGGAAAGAGATCCATGTCATTTTCATCAGGGATTGAGCACGGAGAAGAGGCCAATGCTGAGGAAGATTTGTCGGATGACGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAACTTGCAAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAGAACAGAAGGGCAAGGTGGAAGACCAAGCAGTTAGAGAAAGACTACGATCTTCTCAAAAGACAGTATGAATCTGTCAAGTCAGATAATGATGCACTTCAAACTCAGAACCAAAAACTTCAGGCTGAGGTTAATAGTTACCTTCTAACTCAATCAAATTCCAATCATTTAATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCCATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAACAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTCTCTACACATCAGCCGAGCAGAACCCTGTTTCCATCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGACCTTCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTCTGTGCCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 906 0.4481 MWPKTCNEMAFFPANFMLQTPHHDDHQPPPSLTSILPSCTPQEYHGGVNFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYESVKSDNDALQTQNQKLQAEVNSYLLTQSNSNHLILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRTLFPSSARPAGVAQLFQTSSRPDLPCQKIDQMVKEESLSNMFCAMDDQSGFWPWLEQQHFN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03865 301 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981|GO:0006355
Vimu7g03865 301 SUPERFAMILY Homeodomain-like 75 141 IPR009057 -
Vimu7g03865 301 CDD homeodomain 84 140 IPR001356 GO:0003677
Vimu7g03865 301 FunFam Homeobox-leucine zipper protein ATHB-13 76 143 - -
Vimu7g03865 301 MobiDBLite consensus disorder prediction 198 219 - -
Vimu7g03865 301 MobiDBLite consensus disorder prediction 201 219 - -
Vimu7g03865 301 PRINTS Lambda-repressor HTH signature 119 135 IPR000047 GO:0003677
Vimu7g03865 301 PRINTS Lambda-repressor HTH signature 110 119 IPR000047 GO:0003677
Vimu7g03865 301 SMART HOX_1 82 143 IPR001356 GO:0003677
Vimu7g03865 301 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677
Vimu7g03865 301 MobiDBLite consensus disorder prediction 62 90 - -
Vimu7g03865 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 61 233 IPR045224 GO:0003700
Vimu7g03865 301 Pfam Homeodomain 84 137 IPR001356 GO:0003677
Vimu7g03865 301 Gene3D - 76 145 - -
Vimu7g03865 301 Pfam Homeobox associated leucine zipper 139 175 IPR003106 GO:0006355|GO:0043565
Vimu7g03865 301 Coils Coil 131 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03865 Vimu-Chr7 35552285 35555767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03865 5 301 Homeobox Transcription Factor Family AT1G69780 62.102 2.39e-120 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu7g03865 Homeodomain 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03865 K09338 - gmx:100808033 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03865 7 35552285 35555767 Vimu7g03865 7 35552285 35555767 ECH