Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03856 ATGGGTCCGAACCAAGAATGTTGTATGTACGAGGTAAGGTACCCGGAGGTGGACATGGCGGTGATGATACAAGTAGGGCACATCGAGCCCGTCATGGTCCTCCGTGTCGACAAGGAAAAGGGTTACATCAATCTCAGAGAGCATAGGGTCTACGAAGAGGACATTCAGGCCTGCGAGGAGAGATACAACAAGAGCAAGCTCGTCCACTCCATCATGCGCCACATTGCTGAAATCCTCAACATCGATTTGGAGGAGCTCTATGTTCACATTGGAGGTCATGCTTTTGAGGCTTTCAAAATAATTTCCACCGTTCCTGATTCTGTTTTGAATTTATCCATGTCAGTACATGAGATGATCATGTTGAATCACCCATGTCTTGGGTTCTCTTCTGTGGGATACGGAGCAACACAAGATATTGGTCCATTTTTAGTGGACAATGATGGCCATGGCAACCCAGCATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCATACTCATACAAGCGGTGACTATGACCAATTGGGAGATGATTTAATAGGTCATCATTTATCTTATAATGTTGCTGTTGCATAA 579 0.4491 MGPNQECCMYEVRYPEVDMAVMIQVGHIEPVMVLRVDKEKGYINLREHRVYEEDIQACEERYNKSKLVHSIMRHIAEILNIDLEELYVHIGGHAFEAFKIISTVPDSVLNLSMSVHEMIMLNHPCLGFSSVGYGATQDIGPFLVDNDGHGNPACYSWNLLLELAFHTHTSGDYDQLGDDLIGHHLSYNVAVA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03856 192 Gene3D Translation initiation factor 2; subunit 1; domain 2 52 122 IPR024054 -
Vimu7g03856 192 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 1 28 IPR011488 GO:0003723|GO:0003743
Vimu7g03856 192 SUPERFAMILY eIF2alpha middle domain-like 50 110 IPR024054 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03856 Vimu-Chr7 35293888 35295576 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03856 3 109 Eukaryotic Initiation Factors Gene Family AT2G40290 56.774 1.25e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03856 K03237 - gmx:100805950 162.155