Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03854 ATGGGTAACTGCCTAGATTCTTCTGCCAAAGTTGATGCAGCTCAGAGCTCCAGATCCACTTCTGGAATCTCAAAAACTACACCTTCTAGCTTATCTATTCCATCATACAGTGAAAAAAGCAACGCCTTAAGTCTGCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCAAATCTTAAGTCCTTCACATTCAATGAGCTGAAGAATGCCACCAGAAATTTTCGGCCTGATAGTCTTCTCGGTGAAGGAGGATTTGGATGCGTCTACAAAGGATGGATCGACGAACACACATTTACAGCTTCAAAGCCTGGATCAGGAATGGTGGTTGCCGTAAAGAAGCTCAAACCTGAAGGTTTTCAAGGTCATAAAGAATGGTTGACTGAGGTTAACTACCTTGGACAACTGTACCATCCTAATCTGGTTAAATTAATCGGTTACTCCTTGGAGGGAGAGAATCGGCTATTGGTCTATGAGTTCATGCCGAAAGGGAGCTTAGAGAACCATCTGTTTAGAAGAGGACCACAACCTCTGTCTTGGTCAGTGAGGATGAAAGTGGCTATTGGTGCTGCTAGAGGACTCTGTTTTCTTCATAACGCCAAATCACAAGTCATATACCGTGATTTTAAAGCCTCTAACATCCTACTTGATGCGGAGTTCAATGCTAAACTGTCTGACTTTGGTTTAGCCAAGGCGGGTCCTACAGGTGATAGAACTCACGTCTCTACTCAGGTCATGGGCACTCAAGGATATGCAGCACCTGAATATGTTGCAACTGGTAGGTTGACGGCGAAAAGTGATGTGTACAGCTTTGGAGTTGTGTTACTTGAACTTCTATCTGGAAGAAGAGCTGTTGATAAAGCAATAGCTGGTATGGAGCAGAATCTGGTGGACTGGGCAAAACCATATTTGAGCGACAAACGAAGACTGTTCCGGATCATGGATACCAAGTTGGAGGGGCAGTATCCGCAAAAGGGTGCTTTCATGGCTGCCACACTCGCCCTACAATGCCTCAACAGTGAGGCCAAAACAAGGCCTCCAATGACAGAGGTTTTAGCCACCTTGGAACAGATAGAAGCCCCCAAAGCTTCATCCAGAAACTCTCATTCTGAACACCACCGAGTTCACACTCCTGTCAGAAAATCTCCTGCACGCAACCGCTCACCGCTAAGTCTAACTCCTACTGCATCCCCTCTTCATGCTCACCGGCAATCGCCTCGTCTGCACTGA 1230 0.4626 MGNCLDSSAKVDAAQSSRSTSGISKTTPSSLSIPSYSEKSNALSLPTPRSEGEILSSPNLKSFTFNELKNATRNFRPDSLLGEGGFGCVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGFQGHKEWLTEVNYLGQLYHPNLVKLIGYSLEGENRLLVYEFMPKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLCFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKAIAGMEQNLVDWAKPYLSDKRRLFRIMDTKLEGQYPQKGAFMAATLALQCLNSEAKTRPPMTEVLATLEQIEAPKASSRNSHSEHHRVHTPVRKSPARNRSPLSLTPTASPLHAHRQSPRLH 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03854 409 MobiDBLite consensus disorder prediction 360 409 - -
Vimu7g03854 409 MobiDBLite consensus disorder prediction 1 53 - -
Vimu7g03854 409 FunFam Probable serine/threonine-protein kinase PBL8 161 374 - -
Vimu7g03854 409 CDD STKc_IRAK 81 358 - -
Vimu7g03854 409 PANTHER OS01G0588500 PROTEIN-RELATED 29 359 - -
Vimu7g03854 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Vimu7g03854 409 MobiDBLite consensus disorder prediction 384 400 - -
Vimu7g03854 409 MobiDBLite consensus disorder prediction 9 53 - -
Vimu7g03854 409 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Vimu7g03854 409 Pfam Protein tyrosine and serine/threonine kinase 79 354 IPR001245 GO:0004672|GO:0006468
Vimu7g03854 409 FunFam Serine/threonine-protein kinase BIK1 43 160 - -
Vimu7g03854 409 SUPERFAMILY Protein kinase-like (PK-like) 47 355 IPR011009 -
Vimu7g03854 409 Gene3D Transferase(Phosphotransferase) domain 1 161 382 - -
Vimu7g03854 409 ProSiteProfiles Protein kinase domain profile. 75 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03854 409 ProSitePatterns Protein kinases ATP-binding region signature. 81 114 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03854 Vimu-Chr7 35220253 35222565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03854 51 355 Glycoside Hydrolase AT3G07070 52.597 4.30e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu7g03854 PK_Tyr_Ser-Thr 2.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03854 - - gmx:100809778 776.548