Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03853 ATGGACCTCACCAACAGCGCCAACGACACAGATTCTCAAACTCAAACCCCCCAACACCCAACCACCATCACCTCCACCACCACTAACGGCTCCCTCAAGCGCCACCGCCCCACCACCGTTCCTCCTCCCTCACAACCACCTCCCGCGGTCGTTTCCTACAAGGAGTGCCTCAAAAACCACGCTGCCAGTATAGGTGGCCACGCGCTTGATGGATGCGGTGAGTTCATGCCCTCCTCTTCCTCCAATCCCACAGAACCGCGCTCGCTAACGTGCGCCGCCTGTGGATGCCACCGTAACTTCCACCGCCGTGACACACAACAGTATCAAAATAATCACTCCAACCCCAGGCCCAATTTCATAAGCTTCTACCACTCACCGCCGCCACCCCATCATGGCCCCGCCCTGTGTACCAGCTCAAGCCCAGGCCCGAGTCCAAGCCCAAGTCCGTTGTCAAGCCCAAGCCCGCCGCCTCTCTCCCACCGTTTCCCAGGTCCGAGACCGGTCCAGGGGCTCTTCGGCCAGGGAAACGAGCATCACCTTGCGAGTTTCAATCTTTCCGAGAGCCGGAGTGGAAAGAAGAGGTTCAGGACCAAGTTCAGCCAAGAGCAGAAGGAGAAGATGCAGAATTTCTCGGAGAATTTAGGGTGGAGAATGCAGAAAGGGGATGAAGGGTTGGTGCAAGATTTCTGCAATGAGATTGGCGTTTCAAGAGGGGTCTTCAAGGTGTGGATGCACAACAATAAGAACAGTGGC 753 0.5671 MDLTNSANDTDSQTQTPQHPTTITSTTTNGSLKRHRPTTVPPPSQPPPAVVSYKECLKNHAASIGGHALDGCGEFMPSSSSNPTEPRSLTCAACGCHRNFHRRDTQQYQNNHSNPRPNFISFYHSPPPPHHGPALCTSSSPGPSPSPSPLSSPSPPPLSHRFPGPRPVQGLFGQGNEHHLASFNLSESRSGKKRFRTKFSQEQKEKMQNFSENLGWRMQKGDEGLVQDFCNEIGVSRGVFKVWMHNNKNSG 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03853 251 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 104 IPR006456 -
Vimu7g03853 251 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 53 104 IPR006456 -
Vimu7g03853 251 MobiDBLite consensus disorder prediction 107 174 - -
Vimu7g03853 251 SUPERFAMILY Homeodomain-like 185 249 IPR009057 -
Vimu7g03853 251 Gene3D - 181 251 - -
Vimu7g03853 251 MobiDBLite consensus disorder prediction 1 50 - -
Vimu7g03853 251 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 22 249 - -
Vimu7g03853 251 FunFam Zinc-finger homeodomain protein 2 180 251 - -
Vimu7g03853 251 Pfam ZF-HD protein dimerisation region 51 105 IPR006456 -
Vimu7g03853 251 NCBIfam homeobox domain, ZF-HD class 192 249 IPR006455 -
Vimu7g03853 251 MobiDBLite consensus disorder prediction 121 163 - -
Vimu7g03853 251 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03853 Vimu-Chr7 35007474 35008574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03853 51 250 ZF-HD Transcription Factor Family AT1G69600 47.317 9.14e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu7g03853 ZF-HD_dimer 2.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03853 - - gmx:100785050 303.908