Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03851 ATGTTCTCTCGCTTTTTCGTGAAACCTCGAGATCTGCTCTGCCTCGGTTTTGATTTGGGTTTCGTTTTTCCAATGAGCGATCACTTGGTGCTGTTCGTTGACCGTCTCGCACGCCCTGTCCCCGTTGACCCGGTGGCACAGCCGGCGCAGCTTCCCTCCGAGCCCTCTCCGCCTCCGGCTGCCGCGGATGCCACCACAGCCGCCGCCGGGAGTTCGGGCACCGCTCCGGCGGAGGATCGCGTCGGGGAGGGAGGTGATGAGGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATCTGCCAGGAAGAGGACGGCGTTTCCAATTTGGAAACGCCCTGCGCCTGTAGCGGCAGTCTTAAGTATGCTCACAGAAAGTGTGTTCAGCATTGGTGTGATGAGAAAGGAGACATTACTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTACACTGCACCACCTCCTCGTCCTAACCCTGAAGAAACTACCATTGATATAGGAGGTGGATGGACAATATCTGGCACACCATTGGACTTGCGTGATCCTCGGCTCTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGATGCTGAATATGATGAGTATGCTGCTTCCAATGCCAGTGGGGCTGCATTCTGCCGCTCAGCTGCTTTAATTTTAATGGCTCTTCTACTCTTGCGGCATGCACTTTCTGTCTCGGATAGTGATTCTTCTGACGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCGGCTGGATTTTTATTACCTTGCTACATTATGGCCTGGGCAATCAGTATTCTGCAGCGTCGACGACAGAGACAAGAGGCTGCAGCACTAGCGGCAACCCAAGTTGCTTTTGTTCTGCAATCTGGGCAGCGTAGAGGTCTACAGTTCGCAATAGCACCAGGACCAGCCACAGTACACCAGGAACAAGTGTAA 948 0.5327 MFSRFFVKPRDLLCLGFDLGFVFPMSDHLVLFVDRLARPVPVDPVAQPAQLPSEPSPPPAAADATTAAAGSSGTAPAEDRVGEGGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDITCEICHQPYQPGYTAPPPRPNPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVSDSDSSDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPATVHQEQV 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03851 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 152 IPR013083 -
Vimu7g03851 315 SMART ringv_2 96 143 IPR011016 GO:0008270
Vimu7g03851 315 Pfam RING-variant domain 97 142 IPR011016 GO:0008270
Vimu7g03851 315 Pfam Protein of unknown function (DUF3675) 148 267 IPR022143 -
Vimu7g03851 315 ProSiteProfiles Zinc finger RING-CH-type profile. 89 149 IPR011016 GO:0008270
Vimu7g03851 315 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 25 277 IPR033275 -
Vimu7g03851 315 FunFam RING/FYVE/PHD zinc finger protein 85 153 - -
Vimu7g03851 315 SUPERFAMILY RING/U-box 95 147 - -
Vimu7g03851 315 CDD RING_CH-C4HC3_MARCH 97 143 - -
Vimu7g03851 315 Coils Coil 185 205 - -
Vimu7g03851 315 MobiDBLite consensus disorder prediction 46 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03851 Vimu-Chr7 34964239 34968018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03851 96 172 C3H Transcription Factor Family AT2G37950 37.079 2.52e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03851 - - gmx:100779674 451.825