Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03834 ATGGCTTCAGGGACTGAGGTGCCGGAGAATTCTGTTTTCGAGAGGTTCGACCGAAACAGAGACATAACTCTGTTTCTTCCCTTTCTCTTTGGCCTCTCGGAGACCGCCCCAGGAAGAGATGGCGACGACCCACGTCACGAAAACGGGAACACTGAAGGCCCCCAGCGTCAAAGAATCATCTTGGTGAACCCCTTCACTCAGGGCATGGTGGTCATCGACGCCGACTCGCGCATCGAAGCTCTGTTTCGCGAACTCGGCAGCGGAAAAGGTGGTCGACCTCCGGCTTCCAAAGAATCCATTGAGGCCATGCCAAGTGTGGAAGTTGGAGAGGGTGAGAATTTGGAGTGCGTGGTTTGTTTGGAGGAGTTTGAGGTTGGTGTGATGGCGAAGGAGATGCCATGTAAGCACAAGTTTCATGGTGATTGTATTGAGAAGTGGTTGGGGCTTCATGGGTCTTGCCCTGTGTGTAGGTATGAGATGCCGGTGGAGAAGAATTGCGCGATGAAGAGCGAGGAAGAAGGGGGAGAGAGAAGAAGGGATAGTGGTGATGAAGTTTGGGTTAGTTTTTCTTACAATAGGATTAGGAGAGGCCAGGATCATGATCAAGCTGCTTCTTCAAATGATGATTCTCGATCAAGTCCTGGAGATGATGTCGTAGAGAGTTAG 666 0.5105 MASGTEVPENSVFERFDRNRDITLFLPFLFGLSETAPGRDGDDPRHENGNTEGPQRQRIILVNPFTQGMVVIDADSRIEALFRELGSGKGGRPPASKESIEAMPSVEVGEGENLECVVCLEEFEVGVMAKEMPCKHKFHGDCIEKWLGLHGSCPVCRYEMPVEKNCAMKSEEEGGERRRDSGDEVWVSFSYNRIRRGQDHDQAASSNDDSRSSPGDDVVES 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03834 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 34 161 - -
Vimu7g03834 221 SMART ring_2 116 156 IPR001841 -
Vimu7g03834 221 MobiDBLite consensus disorder prediction 197 221 - -
Vimu7g03834 221 Pfam Ring finger domain 115 157 IPR001841 -
Vimu7g03834 221 SUPERFAMILY RING/U-box 104 163 - -
Vimu7g03834 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 163 IPR013083 -
Vimu7g03834 221 FunFam E3 ubiquitin-protein ligase RNF181 84 163 - -
Vimu7g03834 221 MobiDBLite consensus disorder prediction 38 52 - -
Vimu7g03834 221 MobiDBLite consensus disorder prediction 35 57 - -
Vimu7g03834 221 ProSiteProfiles Zinc finger RING-type profile. 116 157 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03834 Vimu-Chr7 34727402 34728067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03834 4 209 C3H Transcription Factor Family AT1G26800 52.657 7.44e-62 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03834 - - ccaj:109816232 281.567