Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03827 ATGGCCAGCAGCAAGTGTTGCATGATCTCTTCACAACAAAACCAGAATGCCCCCACATGTTACTCTTTTCCATCTTCTCCTTCAATGGGAATGGTCTGTGCAGACATGATGGGGTCTCTCTCTTTTGCTACTGTTTCAAATGCTATTTCATCTCAAGAAAGCTTTGGTTATGGCCATCATGGTCATCCTTCTGGGGTGGGAAATGGAAGGAGCACAAGCTGGAGTTTTCCCTTCATGAGGGAGTTCCTCTCTTCAAACTTTGAAGACTGTAGTGATGTTGGGGCTGGGGAGAGTAACAGTAATGAGAAAACAAACAACAATGGCAAGTTTAGTGAAGAAAGTAACCCTAACGAGAACCTTCTCAGTGGCAAAGAGGTAGATAGTGGACACTCTAAACTGTGTGCAAGAGGGCATTGGAGGCCTGCAGAAGATTCCAAGCTCAAGGAGCTCGTGGCTCTTTATGGCCCTCAGAATTGGAACCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGGAAGAGCTGTAGGCTGAGGTGGTTCAACCAGTTAGATCCAAGGATCAATAGAAGAGCTTTCAGTGAAGAGGAGGAAGAGAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTGAAGAATCACTGGCATGTTATAATGGCCAGGAAGTACAGGGAACAGTCCAGTGCTTACAGGAGGAGGAGAATGAGCCAATCTGTTTACAAAAGGGTGGAGCAAAATCCAAGCTTTGTTTGCAGCAGGGACAATGCTTCAACCACGGAACAAGAACCATCGCCTTCTTATTGTCTCAATCTCCTCCACAATGGAGTAGGAGTCACAAATAACCTGGCTAGTTTCCCATCCTTCCATGGAGTAGGTTCTGGTGAGGTTGTTGATTTTGGCTTAAATGGTTCTCTACAAAACATGAATGGTGTGAGAGAAGCAATGTCAAACACCCTACAAGTTGGCTTGCGTGCTCAAGCTCAACAAGCACCATTTGATTTCTTCTCCGGTGGTGGAAGGAATGACATGACGGGAGAGTCTAACGGGGAGATCAGAAGCTGGGAGAGAAGCAATGAATCTGTTGAATCTGGTTTATACCCTGATTATCCCCAACAATATTTGAGGGCAATGCAACAGCTAGAGAACAAGACACGCAAGAATTTTTACAGTTTCTTGAATTCCTCATGGGCATCAGGAAGCACAGGCAAGGAAGCATCATCATCAGCATGTGTTGCAGGAATGAGAGATAAAGTGGTGAATAGTGACCCCCCAGATGGTGTTCCACCCCCATTTTTTGACTTCCTTGGAGTAGGAGCCACATGA 1365 0.4557 MASSKCCMISSQQNQNAPTCYSFPSSPSMGMVCADMMGSLSFATVSNAISSQESFGYGHHGHPSGVGNGRSTSWSFPFMREFLSSNFEDCSDVGAGESNSNEKTNNNGKFSEESNPNENLLSGKEVDSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVYKRVEQNPSFVCSRDNASTTEQEPSPSYCLNLLHNGVGVTNNLASFPSFHGVGSGEVVDFGLNGSLQNMNGVREAMSNTLQVGLRAQAQQAPFDFFSGGGRNDMTGESNGEIRSWERSNESVESGLYPDYPQQYLRAMQQLENKTRKNFYSFLNSSWASGSTGKEASSSACVAGMRDKVVNSDPPDGVPPPFFDFLGVGAT 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03827 454 ProSiteProfiles Myb-like domain profile. 136 182 IPR001005 -
Vimu7g03827 454 MobiDBLite consensus disorder prediction 93 124 - -
Vimu7g03827 454 Gene3D - 189 260 - -
Vimu7g03827 454 CDD SANT 139 180 IPR001005 -
Vimu7g03827 454 CDD SANT 190 230 IPR001005 -
Vimu7g03827 454 SMART sant 187 235 IPR001005 -
Vimu7g03827 454 SMART sant 135 184 IPR001005 -
Vimu7g03827 454 FunFam MYB transcription factor 189 259 - -
Vimu7g03827 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 237 IPR017930 -
Vimu7g03827 454 Pfam Myb-like DNA-binding domain 136 182 IPR001005 -
Vimu7g03827 454 Pfam Myb-like DNA-binding domain 188 231 IPR001005 -
Vimu7g03827 454 MobiDBLite consensus disorder prediction 93 126 - -
Vimu7g03827 454 Gene3D - 136 187 - -
Vimu7g03827 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 182 IPR017930 -
Vimu7g03827 454 FunFam MYB transcription factor 136 187 - -
Vimu7g03827 454 SUPERFAMILY Homeodomain-like 136 229 IPR009057 -
Vimu7g03827 454 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Vimu7g03827 454 PANTHER MYB PROTEIN-RELATED 122 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03827 Vimu-Chr7 34516861 34518714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03827 129 261 MYB Transcription Factor Family AT1G69560 81.481 1.12e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g03827 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03827 K09422 - gmx:100776292 674.855