Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03823 ATGGCTCAATTTGGTTTGCTGGTCTTGGTCGGGCTTCTTCTCACAATGTTCTCCTCTGCCCATGGCTATGGCTATGGTGGAGGCTGGGTTAATGCGCACGCTACCTTCTATGGAGGGAGTGATGCATCTGGAACAATGGGTGGGGCTTGTGGGTATGGGAATCTCTACAGCCAGGGTTATGGAACAAACACTGCTGCTTTAAGCACTGCTTTGTTCAACAGTGGCCTGAGCTGTGGTTCATGCTATGAGATAAGGTGTGTGAGTGACCACAGGTGGTGCCTTCCCGGTTCCATTTTGGTCACTGCCACCAATTTCTGTCCTCCAAATAATGCCTTACCCAACAATGCAGGAGGGTGGTGCAACCCTCCCCTGCACCATTTTGACCTTTCTCAACCTGTTTTTCTGCGCATTGCACAATACAAAGCAGGAATCGTGCCCGTGTCCTACAGAAGAAGAAGGGGTGGCATAAGGTTCACAATCAATGGTCACTCCTACTTCAACCTGGTCCTGATAACAAACGTAGGAGGTGCTGGGGATGTGCATGGTGTGGCCATAAAAGGGTCAAGAACTGGATGGATGCCAATGTCCAGGAACTGGGGTCAGAACTGGCAGAGCAACAACTATCTCAATGGCCAAAGCCTCTCCTTTAAGGTCACAACCAGTGATGGCCACACAGTGGTGTCCTACAATGTTGCCCCTGCTGGGTGGTCCTTTGGACAAACATACACTGGTGCTCAATTCCGCTAG 747 0.506 MAQFGLLVLVGLLLTMFSSAHGYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCYEIRCVSDHRWCLPGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFLRIAQYKAGIVPVSYRRRRGGIRFTINGHSYFNLVLITNVGGAGDVHGVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGHTVVSYNVAPAGWSFGQTYTGAQFR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03823 248 CDD DPBB_EXPA_N 28 151 - -
Vimu7g03823 248 FunFam Expansin 18 154 - -
Vimu7g03823 248 SUPERFAMILY PHL pollen allergen 152 244 IPR036749 -
Vimu7g03823 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
Vimu7g03823 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Vimu7g03823 248 SUPERFAMILY Barwin-like endoglucanases 28 173 IPR036908 -
Vimu7g03823 248 Gene3D - 16 152 IPR036908 -
Vimu7g03823 248 Pfam Lytic transglycolase 64 149 IPR009009 -
Vimu7g03823 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Vimu7g03823 248 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vimu7g03823 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Vimu7g03823 248 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vimu7g03823 248 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Vimu7g03823 248 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vimu7g03823 248 SMART dpbb_1 64 149 IPR007112 -
Vimu7g03823 248 FunFam Expansin 155 247 - -
Vimu7g03823 248 PANTHER EXPANSIN-A15 12 247 IPR002963 GO:0009664
Vimu7g03823 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Vimu7g03823 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Vimu7g03823 248 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Vimu7g03823 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Vimu7g03823 248 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vimu7g03823 248 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vimu7g03823 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Vimu7g03823 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Vimu7g03823 248 Gene3D - 155 247 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03823 Vimu-Chr7 34349416 34350665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03823 1 248 Expansin Gene Family AT2G03090 80.632 5.55e-148 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03823 - K20628 gmx:100796316 488.034