Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03815 ATGGAGGGCAGAACAAGCTCTGTGCTCCCACCTGGCTTCAGGTTTCACCCCACTGATGAGGAACTAATCGTGCACTACCTTTGTAACCAAGCAACATCAAAACCATGCCCTGCATCAATAATTCCAGAAGTTGATATCTATAAGTTTGATCCGTGGGAATTACCTGAGAAAACAGACTTTGGAGAAAATGAATGGTATTTCTTTAGCCCAAGGGAGAGGAAGTACCCAAATGGAGTGAGGCCTAATAGAGCAACTGTGTCTGGGTATTGGAAGGCCACTGGTACTGATAAAGCAATCTATAGTGGCTCTAAGCATATTGGGGTGAAGAAAGCTTTGGTCTTTTACAAGGGTAAGCCACCAAAGGGTATCAAGACAGATTGGATTATGCATGAGTACAGATTAATAGGATCAAGAAGACAAACCAATAGTTGA 432 0.4282 MEGRTSSVLPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPEKTDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKALVFYKGKPPKGIKTDWIMHEYRLIGSRRQTNS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03815 143 SUPERFAMILY NAC domain 5 139 IPR036093 GO:0003677|GO:0006355
Vimu7g03815 143 Gene3D NAC domain 18 143 IPR036093 GO:0003677|GO:0006355
Vimu7g03815 143 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Vimu7g03815 143 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 134 - -
Vimu7g03815 143 ProSiteProfiles NAC domain profile. 9 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03815 Vimu-Chr7 34106367 34107078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03815 1 141 NAC Transcription Factor Family AT1G69490 83.688 2.55e-88 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu7g03815 NAM 3.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03815 - - pvu:PHAVU_003G045600g 305.064