Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03803 ATGGGAAGGGTGCCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACTCCAGACGAAGACAAGAAGCTCCTCGACTACGTTCGGAAGTATGGTCATGGAAACTGGCGTTCAGTGCCAAATCCGGTAACAATACAACTTCTCTGTCTTGAAAGATGTGGAAAGAGTTGTAGATTGAGGTGGATTAACTATCTCAAACCTGGTATCAAACGAGGAAACTTCAGCGCGGAGGAAGACCGTACCATTATTCAACTTCATGCTCTTCTTGGAAACAGACTCAGATGGTCAATCATAGCAGCTCACCTGCCTCAAAGAACCGACAATGAGATCAAGAACTATTGGAATACCAACATCAAGAAAAGACTCATCAGAATGGGCTTAGATCCCATTACCCACAAAACAATTAAGCAGAATACGTTTGAACCCTTTGGTGGTGGCCATGACCAGTCCAAGGACACCATCAATATCTGCCATGTGGCTCAATGGGAAGGTGCTCGACTTGAAGCTGAAGCCAGAGGTTCTAAGTTGCAAGTTGGATCCGGATCTTCGCAACTCTCTGGGCTAATTTTAAGCAAAATTCCAACTCAACCTTGTCTTTCATCACATTCGGTGTCAACCGAACACAACACAGCGTATAACATGTATGCCCTCGTGCTTGCCACAACTCATGATTTTCGTTCATCTATGTCCACTCTGTGCATTCCCACGCTTCCTGCAGTTTCTAATATTCCACAAATCAAGAACACAGAAAGTTTACTTTCATATAAGGGTGATAATAATGTCATGGGAGCTAGTAGCCAAATTAAAAAGGTAATGGAAGGTTGTGTATCAAACTTACAAGATGATGACATTATGGTGGCTTTGGAAGCGTTTAGAACAGCAAGGTCTCAGAGTATCGAAGAGCTGTTTAATGAACCCACTTCCATTTAG 933 0.4341 MGRVPCCEKVGLKKGPWTPDEDKKLLDYVRKYGHGNWRSVPNPVTIQLLCLERCGKSCRLRWINYLKPGIKRGNFSAEEDRTIIQLHALLGNRLRWSIIAAHLPQRTDNEIKNYWNTNIKKRLIRMGLDPITHKTIKQNTFEPFGGGHDQSKDTINICHVAQWEGARLEAEARGSKLQVGSGSSQLSGLILSKIPTQPCLSSHSVSTEHNTAYNMYALVLATTHDFRSSMSTLCIPTLPAVSNIPQIKNTESLLSYKGDNNVMGASSQIKKVMEGCVSNLQDDDIMVALEAFRTARSQSIEELFNEPTSI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03803 310 CDD SANT 16 66 IPR001005 -
Vimu7g03803 310 SUPERFAMILY Homeodomain-like 11 115 IPR009057 -
Vimu7g03803 310 SMART sant 71 121 IPR001005 -
Vimu7g03803 310 SMART sant 13 68 IPR001005 -
Vimu7g03803 310 FunFam MYB-related transcription factor 13 71 - -
Vimu7g03803 310 Gene3D - 74 123 - -
Vimu7g03803 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 123 IPR017930 -
Vimu7g03803 310 ProSiteProfiles Myb-like domain profile. 67 119 IPR001005 -
Vimu7g03803 310 CDD SANT 74 119 IPR001005 -
Vimu7g03803 310 FunFam MYB transcription factor 73 136 - -
Vimu7g03803 310 Pfam Myb-like DNA-binding domain 14 66 IPR001005 -
Vimu7g03803 310 Pfam Myb-like DNA-binding domain 72 117 IPR001005 -
Vimu7g03803 310 ProSiteProfiles Myb-like domain profile. 9 66 IPR001005 -
Vimu7g03803 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vimu7g03803 310 Gene3D - 13 71 - -
Vimu7g03803 310 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03803 Vimu-Chr7 33818409 33819525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03803 1 201 MYB Transcription Factor Family AT3G01140 58.824 1.01e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g03803 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03803 K09422 - gmx:100790887 425.246