Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03777 ATGGGAGCAAAAGCGTCAATGAAGGATGACAGCGGGGTTCAAACGACGTGGAGGTCAACAACGTTGCGATGGCCACCAATGTCAACGGCAGTGGCTGTCGGTGATGGAGAATGTCCGACGAAGAAACCTAGGGTTGCTCTGCTCCTTTGGCATCGCATATTTATATTCAAACAAACATATGAAGAGCGTACCTGTATCTTTCATCAACAGATACACTCTCTCCCTCCACTCTCCACCGCAACATCCACTTCCGGCGAATTCTCCGATCGTTTGCCGGCTATACCTCATCGGAAGGCATGGCCACGGCCACGGCCACAGAATGAGTCTCCGCCGATCGCCATGTCGGTCTCGTGCTCCAACTGCGTTCCCGACTCCTTCCTTCTCTGCGGCGAGGACTCCTCCGGAGTCTTGTCTGGAGAATCGCCGGAATGTTCCTCCGACCTCGATTCCTCGCCGCCGTCGGAGGAGGTGTCCATCGCTGGATTCATCGAAGACGAACGACACTTCGTTCCCGGATTCGAATACCTCAACAGGTTCCAATCACGCTCTCTCGACGCTTCGGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTGCAGGCTTATTACGCTTTTCAACCTCTCACGGCTTATCTTTCCGTTAATTACATGGATCGATTCTTGAATTCTCGGCCATTGCCGCAAACCAATGGGTGGCCATTGCAACTTCTATCGGTTGCGTGTTTGTCTTTGGCGGCAAAGATGGAGGAACCTCTAGTTCCGTCACTGTTGGACCTTCAGGTAGAAGGTGTCAAATACCTATTTGAGCCAATAACAATTAGAAGAATGGAGCTACTTGTCCTGGGCGTCCTGGATTGGAGACTAAGATCGGTTACTCCATTTAGCTTCCTCGATTTCTTTGCGTGCAAGTTAGATTCAACTGGAACTCTTACCGGGTTCCTCATCTCACGTGCTACTCAAATTATCTTGTCTAATATCCAAGAGGCTAGTTTTCTTGCCTATTGGCCATCATGCATTGCTGCAGCGGCCATTCTCCATGCAGCTAACGAAATTCCTAATTGGTCTCTCGTTAGACCCGAGGATGCCGAGTCGTGGTGCGAGGGGCTAATAAAGGAGAAAATTATAGGATGCTACCAATTAATGCAAGAACTTGTTATTGACAATAACCGGAGGAAACCCCCTAAAGTGTTACCGCAGCTGCGAGTGACATCTCGGCCCCTTATAAGGTCTAGTGTCTCGTCATTCTCAGAATCATCCTCTTCTCCTTCATCCTCATTGTCTTATAAAAGGAGGAAATTAAACAACTCTTTGTGGGTAGATGATGACAAAGGAAACTCCCAGTGA 1344 0.4911 MGAKASMKDDSGVQTTWRSTTLRWPPMSTAVAVGDGECPTKKPRVALLLWHRIFIFKQTYEERTCIFHQQIHSLPPLSTATSTSGEFSDRLPAIPHRKAWPRPRPQNESPPIAMSVSCSNCVPDSFLLCGEDSSGVLSGESPECSSDLDSSPPSEEVSIAGFIEDERHFVPGFEYLNRFQSRSLDASAREESVAWILKVQAYYAFQPLTAYLSVNYMDRFLNSRPLPQTNGWPLQLLSVACLSLAAKMEEPLVPSLLDLQVEGVKYLFEPITIRRMELLVLGVLDWRLRSVTPFSFLDFFACKLDSTGTLTGFLISRATQIILSNIQEASFLAYWPSCIAAAAILHAANEIPNWSLVRPEDAESWCEGLIKEKIIGCYQLMQELVIDNNRRKPPKVLPQLRVTSRPLIRSSVSSFSESSSSPSSSLSYKRRKLNNSLWVDDDKGNSQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03777 447 SUPERFAMILY Cyclin-like 162 288 IPR036915 -
Vimu7g03777 447 SMART cyclin_7 194 282 IPR013763 -
Vimu7g03777 447 SUPERFAMILY Cyclin-like 272 391 IPR036915 -
Vimu7g03777 447 Gene3D - 172 289 - -
Vimu7g03777 447 PANTHER CYCLINS 166 388 IPR039361 -
Vimu7g03777 447 Pfam Cyclin, C-terminal domain 291 396 IPR004367 -
Vimu7g03777 447 CDD CYCLIN_AtCycD-like_rpt2 291 381 - -
Vimu7g03777 447 Pfam Cyclin, N-terminal domain 162 288 IPR006671 -
Vimu7g03777 447 CDD CYCLIN_AtCycD-like_rpt1 188 286 - -
Vimu7g03777 447 SMART Cyclin_C_2 291 424 IPR004367 -
Vimu7g03777 447 ProSitePatterns Cyclins signature. 189 220 IPR006671 -
Vimu7g03777 447 FunFam D2/4-type cyclin 172 289 - -
Vimu7g03777 447 Gene3D - 163 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03777 Vimu-Chr7 33362169 33366246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03777 104 447 Core Cell Cycle Gene Families AT1G70210 64.080 7.46e-139 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03777 K18810 - gmx:100780369 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03777 7 33362169 33366246 Vimu7g03777 7 33362169 33366246 ECH
Vimu7g03777 7 33362169 33366246 Vimu11g02566 11 45321452 45325039 PCT