Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03775 ATGTCGCGTAGACCTCCTCCTCCACCGCCTAATAATGATGATGATCCCATGGAAATGATGAGAATGACGAGGGACATGATGCAGTCCATGCAACAACAAAATTCTGCTTTGGTGCAGCAAAATACTTTGGCAATGCTGCAATTGGAGGCTGCAAGAACATCAGCTGAAGCCTCTCAGAGGCAGTTTGTAGAGATGATGGCTGGTGGAAGGACGACTGCAGGTCCTTCCTCTACTATAGCCCCGGTGCAAGAATGGACATTGGATAACTTTCTACAGCACCGTCCTGCCAGATTTACTGGGCAGTGCACACCGGATGAGGTTGATCAGTGGCTCAGGGATATGGAGAGGATTTATCAGGCTAAGAGGTGCCCTGAAGAGAACAGACTATCATACACAGAGTATTTACTTTCAGGCGATGCTAGTCATTGGTGGAGCAGTGCTAGATCATTATTGGAGAGTACTAATGTTCCAATCACTTGGGACACTTTCAAAACCAAGTTCTATGAGGAATATTTTCCTAACAGTGTGCGATTCGCCAAAGAGGTTGAGTTCTTGCAGCTGGTTCAGGGTAATATGACAGTCTCAGAGTATGCAGATAAGTTTAAACACCTGTTGCGATTTCATACTCTGGCCATGAATGAGGAATACCAATGTCGGAAATTCGATAATGGGTTGAGAAGCGACCTCAAGATCTTGGTTGCTGGCTTTTGTATCAGACAGTTCCCCGTTTTAGTAGAAAGAACAAAGATGATGGAGCGAATGAAGAGAGAATCTGACAGCCAGAGTAGCCAACCACTGAGAGTTGGTGGTCCAGTGACGACGAGTAGTGGATCTAGCTCCAGAGTGACTCCATACTCTAGACCATCTGCTTCTCATGGGTCTAGAGGTTCTTCATCATCATCCCACTCCTCTGTTCCACAGACTCCAGTGAGTGTTCCTGGAGGTATTCGCTGCTTTGGTTGTGGGGGACCTCATCTGTTGTCAGTTTGCCCTCAGAAGGCAGGATTCAGGAGGTGTAACAGGTGCAGGCAGCCAGGACATTTTGAGAGAGATTGCCCTATGGGTAGGAGGGCTGTTGTTCATCCCCAGCCGGCCGGCAGATCTATTCAGAGGGGTGGTGTCAGGCCCCTTGCGACAGGCCGAGTTTATGCAGTGACTGGTGCTGAGGCTGCCAGCTCAGGTAACCTCATCATTGGTAGTTGGTTGTTACGTGATCAGACTTGCATGGTATTGTTTGACTCGGGGGCAACACATTCCTTTATCTCGGAGGAATGTGTTGAGAGGCTGGGATTATCAGTGGAGAGATTACATTTTGATCTAGTGGTGTCTACACCAGCATCAGGGTTGATCAAGACATCGAATGTCTGTATTCGATGCCCGATTGTGGTAGAGGGACGTCGGTTCAAGGTGAACCTCATTTGCTTACCTTTGCAAGGATTAGAGATCATCCTTGGTATGGATTGGTTGTCCACCAATCACATTCTCCTAGATTGCGGCGAAAAGAAATTAGTATTCCCTAATGAGCACGAGTATCAGCCTATATCACTTGGCGTTCTTAGACAGGAGATCTTTGAGGGAGCTAGTTGCTTCCTTGTCATGTCTCACTTAGAGGGAGACTCCTCCATGCCATTAGATCAAGCTGCCAATCTCCCAGTGGTAGCTGATTACTTAGATGTCTTCCCAGAGGAAGTTCCTGGACTACCTCCTCCTAGAGAGGTAGAGTTCTCTATAGACCTTGTGCCACAAGCAGGGCCTATATCCATAGCCCTTTATCGTATGTCGCCTGCAGAACTCGTTGAGTTGAAGAAACAGATTGAGGAATTGCTTGAGAAGCAATTCATTAGACCAAGCGTCTCCCCTTGGGGTGCTCCAGTGTTACTGGTGAAGAAGAAGGATGGTAGCTCTCGTCTCTGTGTGGATTATAGACAATTGAACAAGTTGACAATCAAGAATAAATACCCGCTGCCCAGGATTGATGACTTGATGGACCAATTACATGGAGCTGCAATCTTTTCAAAGATTGATTTGAGGTCGGGATACCATCAGATTTTGGTAAAGGCTGATGACGTGCAGATGACAGCTTTTCGGTCTAGGTATGGCCACTATGAATATGTGGTGATGCCGTTTGGTGTGACCAACGCTCCGGCTATTTTCATGGTCGATCTCTGTGTCAATCACCGTTGGCCACTGTCCGCCGCCGGCAACCACCATCCGCCGCCGGCCACACGACGGCCAACCCCACCGAAATTAGGACCAGACTCCGCTCAACGTACCTCCACGCGCCGCCTTTCTTCAGCTAGTCTAAAGTGCGTGTTTGTCACGCGCCGCCTTCCCGGCGTCAGCATCAAACCACGCCACTACTGGTCGTCTCGCCGGACCTTCCTCTCTCTGTTTTGTCCCTCCATAGCAGCCATTGCTGTCATCTTCAATGTCTTCACAACATCTCCAACAAGAGAGACTTTTCTGCTTTGTTCATCTGTTGTGAGTTTTGAAGCTGAGGAAAATTTAATGGCTGAGGTTTTGACCAAGGCGAGTTTCATTTCTTCTTTGCTCGGTAATAGTCATCGCCACCATCGAATGGGGACGATTCCCAATTCTCGTAGCTTCGGTTTTAGCGCAACTTCTAGATACTCAAAGGCAGTCATGGGTAAGGAAAAGGTTCACATTAGTATTGTGGTCATTGGCCATGTCGACTCTGGGAAGTCTATTACCACTGGCTATCTAATGTACAAGATTGGAGGAATTAACAAGCGTGTGATTGAAAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAAAGGTCATTCAAGTATGTCTGGGTGCTTGACAAACTTAAGGCTGAGCGTGAAAGAGGGATCATAATTGATATTGCGTTGTGGAAGTTTGAAACCACCAAGTACTATTGCATTGTCATTGATGCTCCCGGACACAGGGATTTCATTAAGAACATGATTACAGGGACATCCCAAACTGACTGTGCTGTGCTGATCATTGATTATAGGGACTTCCACAAGCTTGGCGTTGGAGGAGGAATACCCAACAGGGTCAGTTCACGGTTGAGAGCTTCAACTGGTGCTCAGATGACCATTAGAATAGGGAATGTTCAGAAATGGTGGGAAAAGGGGCTTCAACCCAACATGAAAGAGGTGACTTCCGCCCAAGACTTTGTAGAGTCACTATTAAACGCAGGGGACAAGTTGGTGATGGTTGATTTCTTCTCTCCTGGTTGTGGTGGCTGCAAAGCTCTAAATCCTAAGATATGTCAACTGACAAAGATTAATCCCGATGTTCAATTCCTTCAGGAGAATTATGAGGAGCATAAGTCCATGTGTTATAGCCTCAATGTCCATGTTCTTCATTTCTTTCGCTTCTATAGAGGTGCTCATGGTCGATTATGTAGCTTTAGCTGTACCAATGCCACGATCAAGAAGTTTAAAGATGCACTGGCCAAACACTCCGTCTTCTCACTGCACACTTCTGTATCGCCGGACCTCGCTCTCGTTTTTGAGTTCTGGTTTGGTGCGTCTGGTTACTACATTCTGGTTTCTGTCACCACCAATAGGTTTCGCCTCACGTTTCATGACCAGGACCTTTCCTCCCCCTTTCACCAATGGTCGACGCCGGTGCAGTCAGCCGTTGGCGCCGTCAGTCATCATCACCGCAGTCAGTTGTTGCAACCTTTGCAATTTGCCGTTGTTGCCTCAATAAGATGCCGCATATTCTTTGGTCAAGATTAA 3735 0.4728 MSRRPPPPPPNNDDDPMEMMRMTRDMMQSMQQQNSALVQQNTLAMLQLEAARTSAEASQRQFVEMMAGGRTTAGPSSTIAPVQEWTLDNFLQHRPARFTGQCTPDEVDQWLRDMERIYQAKRCPEENRLSYTEYLLSGDASHWWSSARSLLESTNVPITWDTFKTKFYEEYFPNSVRFAKEVEFLQLVQGNMTVSEYADKFKHLLRFHTLAMNEEYQCRKFDNGLRSDLKILVAGFCIRQFPVLVERTKMMERMKRESDSQSSQPLRVGGPVTTSSGSSSRVTPYSRPSASHGSRGSSSSSHSSVPQTPVSVPGGIRCFGCGGPHLLSVCPQKAGFRRCNRCRQPGHFERDCPMGRRAVVHPQPAGRSIQRGGVRPLATGRVYAVTGAEAASSGNLIIGSWLLRDQTCMVLFDSGATHSFISEECVERLGLSVERLHFDLVVSTPASGLIKTSNVCIRCPIVVEGRRFKVNLICLPLQGLEIILGMDWLSTNHILLDCGEKKLVFPNEHEYQPISLGVLRQEIFEGASCFLVMSHLEGDSSMPLDQAANLPVVADYLDVFPEEVPGLPPPREVEFSIDLVPQAGPISIALYRMSPAELVELKKQIEELLEKQFIRPSVSPWGAPVLLVKKKDGSSRLCVDYRQLNKLTIKNKYPLPRIDDLMDQLHGAAIFSKIDLRSGYHQILVKADDVQMTAFRSRYGHYEYVVMPFGVTNAPAIFMVDLCVNHRWPLSAAGNHHPPPATRRPTPPKLGPDSAQRTSTRRLSSASLKCVFVTRRLPGVSIKPRHYWSSRRTFLSLFCPSIAAIAVIFNVFTTSPTRETFLLCSSVVSFEAEENLMAEVLTKASFISSLLGNSHRHHRMGTIPNSRSFGFSATSRYSKAVMGKEKVHISIVVIGHVDSGKSITTGYLMYKIGGINKRVIERFEKEAAEMNKRSFKYVWVLDKLKAERERGIIIDIALWKFETTKYYCIVIDAPGHRDFIKNMITGTSQTDCAVLIIDYRDFHKLGVGGGIPNRVSSRLRASTGAQMTIRIGNVQKWWEKGLQPNMKEVTSAQDFVESLLNAGDKLVMVDFFSPGCGGCKALNPKICQLTKINPDVQFLQENYEEHKSMCYSLNVHVLHFFRFYRGAHGRLCSFSCTNATIKKFKDALAKHSVFSLHTSVSPDLALVFEFWFGASGYYILVSVTTNRFRLTFHDQDLSSPFHQWSTPVQSAVGAVSHHHRSQLLQPLQFAVVASIRCRIFFGQD 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03775 1244 CDD RT_LTR 613 719 - -
Vimu7g03775 1244 CDD TRX_family 1062 1126 - -
Vimu7g03775 1244 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 410 421 IPR001969 GO:0004190|GO:0006508
Vimu7g03775 1244 Gene3D Glutaredoxin 1039 1156 - -
Vimu7g03775 1244 FunFam Elongation factor 1-alpha 882 1005 - -
Vimu7g03775 1244 Pfam Retroviral aspartyl protease 377 509 - -
Vimu7g03775 1244 Pfam Elongation factor Tu GTP binding domain 888 1000 IPR000795 GO:0003924|GO:0005525
Vimu7g03775 1244 PANTHER LDOC1 RELATED 25 734 IPR032567 -
Vimu7g03775 1244 MobiDBLite consensus disorder prediction 252 308 - -
Vimu7g03775 1244 Pfam Retrotransposon gag protein 134 226 IPR005162 -
Vimu7g03775 1244 SUPERFAMILY Thioredoxin-like 1035 1153 IPR036249 -
Vimu7g03775 1244 Gene3D Acid Proteases 386 513 IPR021109 -
Vimu7g03775 1244 Gene3D - 280 359 - -
Vimu7g03775 1244 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Vimu7g03775 1244 SMART c2hcfinal6 317 332 IPR001878 GO:0003676|GO:0008270
Vimu7g03775 1244 SUPERFAMILY Acid proteases 396 497 IPR021109 -
Vimu7g03775 1244 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 886 998 IPR000795 GO:0003924|GO:0005525
Vimu7g03775 1244 Gene3D - 653 719 IPR043128 -
Vimu7g03775 1244 MobiDBLite consensus disorder prediction 734 762 - -
Vimu7g03775 1244 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 573 713 - -
Vimu7g03775 1244 ProSiteProfiles Zinc finger CCHC-type profile. 337 353 IPR001878 GO:0003676|GO:0008270
Vimu7g03775 1244 SUPERFAMILY DNA/RNA polymerases 552 719 IPR043502 -
Vimu7g03775 1244 Pfam Thioredoxin 1050 1126 IPR013766 -
Vimu7g03775 1244 SUPERFAMILY Retrovirus zinc finger-like domains 314 355 IPR036875 GO:0003676|GO:0008270
Vimu7g03775 1244 PRINTS GTP-binding elongation factor signature 969 979 IPR000795 GO:0003924|GO:0005525
Vimu7g03775 1244 PRINTS GTP-binding elongation factor signature 985 996 IPR000795 GO:0003924|GO:0005525
Vimu7g03775 1244 PRINTS GTP-binding elongation factor signature 949 957 IPR000795 GO:0003924|GO:0005525
Vimu7g03775 1244 PRINTS GTP-binding elongation factor signature 890 903 IPR000795 GO:0003924|GO:0005525
Vimu7g03775 1244 Gene3D - 873 1005 IPR027417 -
Vimu7g03775 1244 MobiDBLite consensus disorder prediction 261 308 - -
Vimu7g03775 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 884 1002 IPR027417 -
Vimu7g03775 1244 FunFam Thioredoxin-like 1-2, chloroplastic 1035 1153 - -
Vimu7g03775 1244 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 628 719 IPR000477 -
Vimu7g03775 1244 CDD retropepsin_like 405 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03775 Vimu-Chr7 33344455 33348433 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03775 882 998 Eukaryotic Initiation Factors Gene Family AT1G07930 90.598 1.13e-65 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03775 - - vra:106779532 920.998