Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03742 ATGGCCACTATTGGCATTAGATTTGGAGCAGCACAATTAGATGCTCTCTTCATCATCACTTCCTTGTTATCATCATTATTAGGGGTTCACTCTCAAATCCTTCTCAGCAATGGTGCTATCACCAACCCCCCTATTCTTTCTCCATATTCTTCTTCTTCTTCTTCTTCTTTACCCTCGGTGCCTTATGTTTCCAATTATCAGAAACAATCAGCTCCGTCCCCAGCTTCTTCATCCGGGAACAAAATAAGCCCTGCAATTCTTTTCATCATAGTCATTTTAGCTGTGGTGTTTTTCATCTTGGGTCTCCTTCACTTGCTTGTTAGATTTCTCATAAAGCATAGGTCTTCTAATTCATCAATTTCCCAATCAAATAGGTACCCTGACATGTCCGAATCAGATGCTTACCAGAGACAGTTACAACAGCTCTTCCATCTTCATGATTCAGGCCTGGATCAGGCTTTCATAGATGCTCTTCCCGTCTTCTTTTACAAAGAGATTATAGGCCTGAAAGAGCCATTTGATTGTGCTGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAATTGAGACTGCTGCCCATATGTAATCATGCTTTTCACATTGAATGCATAGATACATGGTTGTTGTCCAATTCAACTTGTCCTCTCTGTAGAGGGACTCTGTATTCACCAGGCTATGCCTTTGAGAACTCAGCTTTTGACTTTGAAAGTCAACTTGAGGAAGATGAGGTGTCAAGCAGTGGTGGAGGTGGGGTTGGGGTTGGGGTTGGTTCTTTTCACAAAACTGTAGAAAGCCACATAGTGAATGGCAAAAGGGTGTTTTCTGTTAGGCTTGGAAAATTCAGAAGCACAAACAACGGAGATGGAGTGGAGAGAGGTGAATGTGAGAGCAGTAGTGGAAATTTGGATGTTAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGCTGATTCAGATCTGAGAGTGGCTCTAGGCCCTCCTAGAGGTGATGGAGGCAGTGGCAGCATGAGACAACTGAAGGGAAGAACAGCTCCAAATGGAAGTTCTCTCATTGATGGGGAAATTGAGGGTAAGAAAATCAACCTTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAAGATAAGTTGTCAGGTTCATCTCATTCTCACTTCCATAATTCTACTCTCACTGCAACTTTGCCATGGATGAATAAAGCCAGAGCGACAGAACTTGTAAATTGTGCCATAAACATAATGAGACAATGTTCTTTGAGCAACCATTAA 1287 0.4235 MATIGIRFGAAQLDALFIITSLLSSLLGVHSQILLSNGAITNPPILSPYSSSSSSSLPSVPYVSNYQKQSAPSPASSSGNKISPAILFIIVILAVVFFILGLLHLLVRFLIKHRSSNSSISQSNRYPDMSESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPICNHAFHIECIDTWLLSNSTCPLCRGTLYSPGYAFENSAFDFESQLEEDEVSSSGGGGVGVGVGSFHKTVESHIVNGKRVFSVRLGKFRSTNNGDGVERGECESSSGNLDVRRCYSMGSFQYVVADSDLRVALGPPRGDGGSGSMRQLKGRTAPNGSSLIDGEIEGKKINLARKGESFSVSKIWQWSRKDKLSGSSHSHFHNSTLTATLPWMNKARATELVNCAINIMRQCSLSNH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03742 428 SUPERFAMILY RING/U-box 154 223 - -
Vimu7g03742 428 FunFam RING-H2 finger protein ATL46 137 222 - -
Vimu7g03742 428 SMART ring_2 175 216 IPR001841 -
Vimu7g03742 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 77 376 - -
Vimu7g03742 428 Pfam Ring finger domain 174 217 IPR001841 -
Vimu7g03742 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 222 IPR013083 -
Vimu7g03742 428 ProSiteProfiles Zinc finger RING-type profile. 175 217 IPR001841 -
Vimu7g03742 428 CDD RING-H2_EL5-like 174 217 - -
Vimu7g03742 428 MobiDBLite consensus disorder prediction 327 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03742 Vimu-Chr7 32867546 32869286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03742 76 388 C3H Transcription Factor Family AT2G18650 41.888 3.90e-59 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03742 - - gmx:100805154 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03742 7 32867546 32869286 Vimu7g03742 7 32867546 32869286 ECH
Vimu7g03742 7 32867546 32869286 Vimu11g02581 11 45848239 45850805 PCT