Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03737 ATGGCATCAAGATCATATGCTAACCTACTAGACTTAGCTGGAGGTTTACTTGATATTCCTCATTCACCAAGAAGTATTCCAAGGATTATGACAGTTCCTGGAGTTATTTCTGACCTGGATGCTTCTGGTAGATACGATGGGGATTCCGATGTTAGTTCTTCTGGCTACAGGGAGCGGAAAATCCTTGTGGCAAACATGTTGCCATTGCAGGCTAAGAGAGATGTAGACACTGGTAAATGGTGTTTCAGTTTGGATGAGGATTCAATTCTGTTACAATTAAAAGATGGTTTTTCTTCTGATACTGAGGTGATCTATGTCGGATCCCTCAAGGTTGAAATAGAGGCCCATGAGCAGGAAGCAGTTGCTCAGAAACTACAGGAGGACTTTAATTGCATACCTACCTTTTTACCCCATGATCTCATGAAAAACTTTTATCTTGGCTTTTGCAAACAGCAGCTCTGGCCTCTCTTTCATTACATGCTACCTATGTTCCCTGATCACGGTGAGCGGTTTGACCGCACGCTTTGGAAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTTATGGAAATAATCAATCCTGATGATGATTATGTTTGGGTTCAGGACTATCACTTGATGGTTTTGCCTACATTCCTGAGAAAGCGGTATAATCGTGTTAAACTTGGATTCTTTCTTCACAGTCCGTTCCCTTCATCTGAAATTTACCGAACTTTACCTGTAAGGGATGAAATTCTGAGGGGCTTGTTGAATACTGATTTAATTGGCTTCCACACATTTGATTATGCTCGCCACTTTCTCTCTTGTTGCAAAAGAATGCTAGGTCTTGACTACGAATCTAAACGAGGACATATAGGACTTGATTACTTCGGGCGTACTGTATTTATCAAAATTTTGCCTGTAGGCATTCATATGGGTAGGCTTGAGTCTGTATTAAATCTCCAATCTACGTCAGCTAAACTGAAAGAAATTCAGGAAGAGTTTAAGGGTAGGAAGGTGATTCTTGGTGTTGATGACATGGATATCTTTAAAGGCATCAGTCTGAAGCTTCTAGCTGTTGAGCAGCTGCTGGAACAGAATCGAGATTTGAAGGGCAAAGTTGTCCTGATACAAATTGTGAATCCTGCTAGGAGTTCAGGAAAGGGTGTTCAGGAAGCAAAAAGGGAAACGTATTTAATTGCCCAGAGGATTAATGATACTTATGGCTCAAACCATTATCAGCCAGTTATTCTCATTGACCGTCCTGTTCCTCGTTTTGAAAAGAGTGCCTATTATGCTGTAGCAGAATGTTGCATTGTTAATGCTGTGAGGGATGGTATGAACTTAGTCCCATACAAGTATATTGTCTGCAGACAAGGAACTGCACAGATGGATAAAGCTTTGAGTAGAAAAAGTGATTCTCCCCGTACGAGCACGATAGTTGTGTCTGAGTTCATCGGTTGTTCTCCTTCTCTAAGTGGAGCAATCAGGGTCAATCCCTGGAACATAGACTCTGTGGCTGATGCTCTGTATTCCGCTGTTACTATGAATGATTCAGAGAAGCAATTGAGGCACGAGAAGCACTACCGGTACATCAGTTCTCATGATGTGGCGTATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCATGCAAAGATCATTACACCAAAAGGTGCTGGGGAATGGGTTTGGGCCTAGGATTTAGAGTTGTTTCTCTTTCTCCTGGTTTTAGAAAATTGTCTGTTGATCACATTGTTTCAGCATACAAAAGGACTGGTAAACGAGCCATATTTCTTGATTATGATGGTACTATCGTATCAAAATCTTCTATAAACAAAACCCCCAGCTCTGATGTCATATCCGTTCTAAATGATATGTGTAATGATCCTAAAAATACCGTCTTCATTGTGAGTGGAAGGTCAAGAGATTCTTTAAGTAATTGGTTTAGTTCATGCAAAGAGATTGGACTTGCTGCCGAACATGGATACTTTTTAAGGTGGAACAAAGATTCTGAATGGGAAACCAGTCACTTGTCTTCTGATCTTGATTGGAAGAAGATTGTGGAACCTGTCATGCAATTGTATACGGAGGCAACTGATGGATCTAATATTGAAACTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCGGACCCTGATTTTGGCTCTTGCCAGGCCAAAGAATTGTCAAATCATCTGGAAAGTGTCCTTGCCAATGAACCTGCAGTTGTCACCCGGGGCCAGCATATTGTCGAAGTCAAGCCACAGGGCTTAAACAAAGGCTTGGTAACTGAAAAGATTCTTTCCACTATGGTTAATGGTGGTAATCCGCCAGATTTTGTGATGTGCGTGGGAGATGACATTTCCGATGAAGACATGTTTGAGAGCATATTAAGGACAGTTTCATGCCCATCATTACCGGTAGTTCCAGAGATCTTTGCCTGCACTGTTGGTCAGAAACCCAGTAAGGCCAAATATTATCTAGATGATTCTGCTGATGTCATGAAGTTGCTTCATGGTCTTGGTGCTTCATCTAAACCAAAGCCCAGGAATCTAGCACAATTCCAAGTTTCCTTTGAAAGCACGATGGAATTCTTTGCACCTGAACCGGTTTGCATGGCCTGTGGAAGCATTTATACTTTAGTTGTGCTTAGAACTGTAGACCATACACCTGTTTGCCCTGTTGAACATGGGGCACTAATAGCTTGTACAGTTACACTATTTTTCTTCACTATACATAATCACCATCTGCTTTCAGATATCCTGCTTCAACTTAAACCTTCACTTAGCTTACTCACAAAGTAA 2796 0.4145 MASRSYANLLDLAGGLLDIPHSPRSIPRIMTVPGVISDLDASGRYDGDSDVSSSGYRERKILVANMLPLQAKRDVDTGKWCFSLDEDSILLQLKDGFSSDTEVIYVGSLKVEIEAHEQEAVAQKLQEDFNCIPTFLPHDLMKNFYLGFCKQQLWPLFHYMLPMFPDHGERFDRTLWKAYVSANKIFADKVMEIINPDDDYVWVQDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNTDLIGFHTFDYARHFLSCCKRMLGLDYESKRGHIGLDYFGRTVFIKILPVGIHMGRLESVLNLQSTSAKLKEIQEEFKGRKVILGVDDMDIFKGISLKLLAVEQLLEQNRDLKGKVVLIQIVNPARSSGKGVQEAKRETYLIAQRINDTYGSNHYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQMDKALSRKSDSPRTSTIVVSEFIGCSPSLSGAIRVNPWNIDSVADALYSAVTMNDSEKQLRHEKHYRYISSHDVAYWARSFMQDLERACKDHYTKRCWGMGLGLGFRVVSLSPGFRKLSVDHIVSAYKRTGKRAIFLDYDGTIVSKSSINKTPSSDVISVLNDMCNDPKNTVFIVSGRSRDSLSNWFSSCKEIGLAAEHGYFLRWNKDSEWETSHLSSDLDWKKIVEPVMQLYTEATDGSNIETKESALVWHHQDADPDFGSCQAKELSNHLESVLANEPAVVTRGQHIVEVKPQGLNKGLVTEKILSTMVNGGNPPDFVMCVGDDISDEDMFESILRTVSCPSLPVVPEIFACTVGQKPSKAKYYLDDSADVMKLLHGLGASSKPKPRNLAQFQVSFESTMEFFAPEPVCMACGSIYTLVVLRTVDHTPVCPVEHGALIACTVTLFFFTIHNHHLLSDILLQLKPSLSLLTK 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03737 931 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 590 707 - -
Vimu7g03737 931 CDD HAD_TPP 592 833 - -
Vimu7g03737 931 Gene3D Glycogen Phosphorylase B; 313 528 - -
Vimu7g03737 931 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 548 - -
Vimu7g03737 931 Gene3D - 590 708 IPR023214 -
Vimu7g03737 931 Gene3D - 721 850 IPR023214 -
Vimu7g03737 931 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 840 IPR001830 GO:0003824|GO:0005992
Vimu7g03737 931 NCBIfam trehalose-phosphatase 590 836 IPR003337 GO:0003824|GO:0005992
Vimu7g03737 931 SUPERFAMILY HAD-like 591 838 IPR036412 -
Vimu7g03737 931 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Vimu7g03737 931 Pfam Trehalose-phosphatase 594 828 IPR003337 GO:0003824|GO:0005992
Vimu7g03737 931 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 720 851 - -
Vimu7g03737 931 NCBIfam HAD-IIB family hydrolase 592 793 IPR006379 -
Vimu7g03737 931 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Vimu7g03737 931 Gene3D Glycogen Phosphorylase B; 53 312 - -
Vimu7g03737 931 FunFam Alpha,alpha-trehalose-phosphate synthase 313 528 - -
Vimu7g03737 931 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03737 Vimu-Chr7 32756089 32759259 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03737 1 860 Trehalose Biosynthesis Gene Families AT1G23870 72.581 0.0 1333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03737 K16055 - gmx:100818536 1628.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03737 7 32756089 32759259 Vimu7g03737 7 32756089 32759259 ECH
Vimu7g03737 7 32756089 32759259 Vimu11g03269 11 52820704 52822953 PCT
Vimu7g03737 7 32756089 32759259 Vimu10g01201 10 11881346 11888858 PCT