Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03729 ATGGAGACTCTTATCGTTCCACGGACAACCGATACGCCTCTGGAAACCCAGTACATTACATCAAGAACCACCACCTCAAGCACACAGTACATCCACAACACTTTCGCCATCAGCGTCCCCTCCGTCACCCTCCCCGACCGCAAACCGGTTGTCCAGTACCTCCAGGGTACCCTCACCTCCACCGATTCCATCGAGGACTGTCCTGAGGACCCCTCTTTCGCCCCTAAATCCACCATCCCTTCCTCTACAGCGTCCTCGTCTCCGCCACCAAGCGGGTTTAGGGTTTTCGGACGACATGGGCGGGTTCTTGGTGTTTGCTCTCTCAAACTCAAGAGTTTGTTGTTCCCATATTTTGGATTTCTAACTGATGAAGCGTTTGTGAGTCTTCGGCCAACTCAGATGGGCTTGTCTCTTAATATTGATGTCTCATCTAGGGCATTTTATGAGGCCATTCCTGTCCTTGGCTTCGTTTCGAAGAATTTTAGACTCGATCTTCGCAGGCCTTTGCCTGATCAGGACCGAATTAAGAGATACACTAAGAGATTAAATGAGGATCAAATGACTGCTCTTTTACGTGCCACATGTCAGCGTCCTCGTGATAGGGAAGACTCCACCAGACAGATTGTGAGGCAGAGCAAATTCATCACGGACAAATTTGCTCGACATTTTGAAATTCAAGTTGAACCATACATTCTGGAAAATTCTAGTTGGAAGATTCTTTACGTCTTTCAATTCTGTTATGATTTTACTATCCAATATAAGCCTGGAAAAGAGAACATTCCCACTGATCCTTTGTCTAGAAGTTGTTTGATGGCTTGGTCTGAGTCTAATTTTAAATGGCTAGAACAAATTGCTCAGATGACCATAGCAGATGCAGAATTGAACAAGTTGTTGCTGCAACATACTCAATGCATTTTACCTGCTCATAAGTTTGTCGTTAAAGATGGTATAGTTTTCAAAAGGGGAAGATTAATGATACCAGCAGACATGAGATTGAGGAATCAAATTCTGCAGGAGTTTCATGATTCTAAAGTGGGTGGTCATGCGGGCACTACTAAGACTATAGCCCGAATCTGCAAGCAGTTTTATTGGCCCAAGATGCAGGAAGATATCAAGCAATATATAAGAAAGGGCAGAAAACGTTGGGGATACATCTCTAGGAAAAAGGATGCTCCAGAGAACAAGAAATCTGATGAATATGAAGCATGGGAAGATGAAAACTACCTAGTCAAGTCTTGGCTTCTGGACTCCATGACGAAAGAAATCAGATCCCTCTTTATTTGCTTAGCTACGGCAAAGGACATTTGGGACGCTGTGCAACAAACATACTCAGTCAAGTAG 1341 0.4422 METLIVPRTTDTPLETQYITSRTTTSSTQYIHNTFAISVPSVTLPDRKPVVQYLQGTLTSTDSIEDCPEDPSFAPKSTIPSSTASSSPPPSGFRVFGRHGRVLGVCSLKLKSLLFPYFGFLTDEAFVSLRPTQMGLSLNIDVSSRAFYEAIPVLGFVSKNFRLDLRRPLPDQDRIKRYTKRLNEDQMTALLRATCQRPRDREDSTRQIVRQSKFITDKFARHFEIQVEPYILENSSWKILYVFQFCYDFTIQYKPGKENIPTDPLSRSCLMAWSESNFKWLEQIAQMTIADAELNKLLLQHTQCILPAHKFVVKDGIVFKRGRLMIPADMRLRNQILQEFHDSKVGGHAGTTKTIARICKQFYWPKMQEDIKQYIRKGRKRWGYISRKKDAPENKKSDEYEAWEDENYLVKSWLLDSMTKEIRSLFICLATAKDIWDAVQQTYSVK 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03729 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 176 233 - -
Vimu7g03729 446 Gene3D - 298 380 - -
Vimu7g03729 446 MobiDBLite consensus disorder prediction 75 90 - -
Vimu7g03729 446 MobiDBLite consensus disorder prediction 61 91 - -
Vimu7g03729 446 Pfam Argonaute linker 1 domain 126 149 IPR014811 -
Vimu7g03729 446 FunFam Retrovirus-related Pol polyprotein from transposon gypsy-like Protein 299 380 - -
Vimu7g03729 446 Pfam Integrase zinc binding domain 331 377 IPR041588 -
Vimu7g03729 446 SMART DUF1785_2 67 150 IPR014811 -
Vimu7g03729 446 SUPERFAMILY PAZ domain 126 211 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03729 Vimu-Chr7 32597304 32608964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03729 126 253 Eukaryotic Initiation Factors Gene Family AT5G43810 37.692 1.51e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03729 - - vum:124838000 133.265