Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03728 ATGGCTTCTTCAACGAGGATCTCAAGGCTGCTCTCTCGTTCTTTCCTTTCTGCTGCCTCTAATCCTTTGTTTTCTAGAGTTACCAATTTGTTGGAGATGGTTGAATTGATAAGATGTTATACAGAACCTGTTCCTTTCAAAGATTCACTTCCATTTTTGATACGAAAATCTAAACGTGGAAGTGGTGCTCTTGGTGGAGGACTCAGTAAATTCAGCACTGCTGCTGCCACTGAAGAACCAATTAAACCAGCAGTTAGAGTAGAACACACCCAGCTCTTAATTGATGGAAAATTTGTCAATTCTGCTTCCGGCAAAACTTTTCCAACGTTGGATCCCAGAACAGGAGAAGTGATTGCTCATATTGCTGAGGGGGACCATGAAGATGTTGATCGAGCAGTTGCCGTTGCTCGCAAGGCATTCGACCACGGACCTTGGCCTAAGATGACAGCCTATGAAAGACAAAAGGTATTGCTACGTGCTGCTGATCTGATTGAAAAACACACTGACGTGATTTCTGCACTTGAGACATGGGATACTGGGAAGCCATACGAACAAGTTGCTAAAATTGAAGTTCCAATTGTGGTTCGCCTATTTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGATGGGCCATACACTGTGCAAACATTGCATGAACCTATTGGTGTGGCCGGTCAGATCATTCCATGGAACTTTCCTCTTCTCATGTTTAGCTGGAAGATTTGCCCAGCATTGGCCTGTGGTAACACTGTTGTGATCAAAACAGCTGAGCAGACTCCTTTATCTGCTATCTATGCATCAAAGTTGCTTCATGAGGCAGGACTTCCTCCTGGTGTGTTGAACGTCATATCTGGTTTTGGTCCAACTGCTGGTGCTGCCATTGCCAGTCACATGAACGTAGACAAGCTTGCTTTCACTGGTTCAACCGATACTGGAAAAATTGTCCTTGAACTGGCAGCTAAAAGCAATCTTAAGCCTGTTACTCTGGAGCTTGGTGGCAAATCCCCTTTTATTGTATGCGAAGATGCTGATGTAGATGAGGCTGTTGAGCTAGCACACTTTGCATTATTCTTTAACCAGGGACAATGCTGCTGTGCTGGGTCAAGAACATTTGTACACGAACGTGTGTACGATGAATTTGTTGAGAAAGCAAGGACACGTGCTTTGAAACGTGCTGTTGGTGATCCATTCAAAGCGGGAATAGAGCAAGGTCCTCAGATTGATTCAGAACAATTTCAGAAAATATTGAAGTATATTAGATCTGGTGTTGAAAGTGGAGCTACACTTGAAAGTGGAGGAGATAGATTTGGCAACTCCGGCTTCTATGTTCAACCCACTGTCTTCTCAAATGTTAAGGATGATATGCTGATTGCAAAGGACGAGATCTTTGGGCCAGTGCAATCCATATTAAAATTCAAGGAAATTGATGAGGTGATTGAAAGAGCAAACAACACACAGTATGGGCTTGCAGCAGGAGTGTTCACAAAAAACATTGACACGGCAAACACTTTGAGCAGAGCATTGAAAGTTGGAACAGTGTGGGTGAACTGCTTTGATACATTTGATGCAGCAATTCCCTTTGGAGGGTACAAAATGAGTGGTCAAGGAAGAGAAAAAGGAGAATACAGTCTAAGAAATTACTTGCAAGTGAAGGCTGTTGTCACATCCTTGAAGAACCCATCTTGGCTTTGA 1713 0.4337 MASSTRISRLLSRSFLSAASNPLFSRVTNLLEMVELIRCYTEPVPFKDSLPFLIRKSKRGSGALGGGLSKFSTAAATEEPIKPAVRVEHTQLLIDGKFVNSASGKTFPTLDPRTGEVIAHIAEGDHEDVDRAVAVARKAFDHGPWPKMTAYERQKVLLRAADLIEKHTDVISALETWDTGKPYEQVAKIEVPIVVRLFRYYAGWADKIHGLTVPADGPYTVQTLHEPIGVAGQIIPWNFPLLMFSWKICPALACGNTVVIKTAEQTPLSAIYASKLLHEAGLPPGVLNVISGFGPTAGAAIASHMNVDKLAFTGSTDTGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDEAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKARTRALKRAVGDPFKAGIEQGPQIDSEQFQKILKYIRSGVESGATLESGGDRFGNSGFYVQPTVFSNVKDDMLIAKDEIFGPVQSILKFKEIDEVIERANNTQYGLAAGVFTKNIDTANTLSRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLRNYLQVKAVVTSLKNPSWL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03728 570 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 340 529 IPR016163 GO:0016620
Vimu7g03728 570 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 94 352 - -
Vimu7g03728 570 CDD ALDH_F2BC 87 562 - -
Vimu7g03728 570 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 94 558 IPR016162 GO:0016491
Vimu7g03728 570 FunFam Aldehyde dehydrogenase, putative 532 558 - -
Vimu7g03728 570 SUPERFAMILY ALDH-like 86 564 IPR016161 GO:0016491
Vimu7g03728 570 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 336 343 IPR029510 GO:0016491
Vimu7g03728 570 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 74 560 - -
Vimu7g03728 570 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 364 375 IPR016160 GO:0016491
Vimu7g03728 570 FunFam Mitochondrial aldehyde dehydrogenase 2 342 531 - -
Vimu7g03728 570 Pfam Aldehyde dehydrogenase family 99 560 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03728 Vimu-Chr7 32578951 32582980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03728 3 570 Aldehyde Dehydrogenase Gene Family AT3G48000 71.705 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03728 K00128 - gmx:100786773 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03728 7 32578951 32582980 Vimu7g03728 7 32578951 32582980 ECH
Vimu7g03728 7 32578951 32582980 Vimu11g03252 11 52583251 52586928 PCT