Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03719 ATGATCCGAAACATAAGCCGGTCGGGTCGCCGGATACTAACTTTCCCGGCGGTTCATCCATGCGAAAGCATCGCTCCCTCTACCCTTCTCCCTTCACTCATCACTCTCTGCAAAGCTATCTCCTCTTTCCAGCACAGGTTATCGTGTTTTCCTTGCAACAAGCGAAACGCGAGAAACGCTATTCGTTTGACCCATCTTCTCCAACCTTTCCTTCGTGAAATCCGGGACTGTCATTCGGGTCTTCCTGATCCTGCAGCTCTGAGCCTCTCCGAGCTCCATTTAACCTTCCAGAAGCTTCTTTTCCTTCTTGAAGATCTCTCCCGCGAAGGTGCCAAGCTTTACATGTTGATGGAATCGGATCGGGTTGCCACTCAATTTCGGGTCATATCAAGATCCATAGCCACTGCTTTAGACGTTTTCCCTTTCGGTTCTGTGGAGATCTCTGAGGAAACCAAAGAGCATGCTTTGCTGCTGAACGTACAAGCCAGGAAGGGCAGGTTTGAATTTGAGGAAGAAGATAAACGGGTTGTGATGAGTGTTGTGTCGAGTTTGACCCGGTTTGAGAACCAGGTTCCTCCGGATGAGGGTGATCTGAGGTGCGTCATTGAGTATATTGGGGTTAAAGGGTGGAATGAGTGTAACAAAGAGGTGAAGTTTTTGGAGGGAGAAATTGGGTTTAAGGGCTCCGATGAGAAGAGGAACAAGGTGTCACTTTTGAGTAGTTTGGTGGGGTTCATGATTTATTGTAGATGCCTTGTGATGGAGGTTGTTGACTGTGAAGAGAGTAACAAAAAAATTGAGGGAAGGAGAGAAAATAGAATTGAAAGTGAGATTGATCTGAGTTTAAGTTGTCTTAACCCGGATGATTTTCTATGTCCAATCTCTTTGGAACTGATGAGTGATCCAGTGACAATAGAGACAGGTCATACGTATGATCGTTCTTCAATTCTGAAGTGGTTCAGAAGTGGAAATTTGACGTGTCCTAACACAGCTAAAAGGCTTATCACCACTGAAATGGTTCCAAACTTAGTGCTTCGGAAGTTGATTCAGCAGTATTGCTATGCAAATGACATAAGCATTCCCTTTGTTGATTTGGTTCGTAGGAATCGTGAGGGTACTAGGAGAGTGGAGCCTGAGAGTGTAGCAGCAGAGGGAGCGATGAGAATGTTGGCTAGTTTTCTAAAAGGGAAGATTGAGAATGGAAGTGCGGAAGAGATGAATAGAGGTGCATTTGAAATAAGGCTTATTTCCAAAACAAGCGTTTTCAATAGGTCTTGTTTGGTGGAAGCTGGTTTGGTTCCTCTTTTGTTGAGGTTATTGTCATCGATGGATTCGTTGACTCAAGAGAATGCTGCAGCAGCCCTTCTAAACCTCTCAAAATGTGCAAAGAGTAGAAGTGTGATGGTTGAGAAAAGGGGATTGGAATTAATTGTTGGGGTTTTAAAGAAGGGTGTGAAGATGGAAGCTCGCCAGCATGCTGCTGCTGTGTTGTTTTACCTTAGTGCTGAGTATGGGAATCTGATAAGGAAGGAGGCAGAAGCAATTCCAGCATTGATAAGGCTTATCAAAGATGGGTCTTATCGAAGCAAGAAAAATGGGTTGGTTGCAATTTTTGGTCTTGTTAAGCATGCTGAAAATCATAGGAGGGTGGTCGAAGGTGGAGCAGTTCCTTTGCTAGTTGGTATATTGAAAGGATCTGAAAATGAAGACCTAATCACAGATTCTCTGGCAGTTCTAGCAACTCTAGCAGAGAAGAGTGAGGGAATGTTTGCAATTCTTGAGGAAGAGGGTTTGCATGTAGCTGTTGAAATTTTGAGTTGTTCATCTTCGAGGGTGGGAAGGGAGCATTGTGTGGCCTTGTTGCTTTCTTTGTCTCTAAATGGTGGAGAAGAAGTGGTTGGTTATTTAGTGAAGAGTCCTTCTCTTATGGAATCATTGTATTCCCAACTAAGTGGAGGCACATCTCGAGCAAGGAAGAAAGCTAGTGCTCTCATTAGGGTCCTCCATGATTTTTATGAAAGGAGGTCCTCTGGCTTTAAGATTTCACTTATTCCGCAAGAACAGTTCATTCATGTTCGGTAA 2082 0.4404 MIRNISRSGRRILTFPAVHPCESIAPSTLLPSLITLCKAISSFQHRLSCFPCNKRNARNAIRLTHLLQPFLREIRDCHSGLPDPAALSLSELHLTFQKLLFLLEDLSREGAKLYMLMESDRVATQFRVISRSIATALDVFPFGSVEISEETKEHALLLNVQARKGRFEFEEEDKRVVMSVVSSLTRFENQVPPDEGDLRCVIEYIGVKGWNECNKEVKFLEGEIGFKGSDEKRNKVSLLSSLVGFMIYCRCLVMEVVDCEESNKKIEGRRENRIESEIDLSLSCLNPDDFLCPISLELMSDPVTIETGHTYDRSSILKWFRSGNLTCPNTAKRLITTEMVPNLVLRKLIQQYCYANDISIPFVDLVRRNREGTRRVEPESVAAEGAMRMLASFLKGKIENGSAEEMNRGAFEIRLISKTSVFNRSCLVEAGLVPLLLRLLSSMDSLTQENAAAALLNLSKCAKSRSVMVEKRGLELIVGVLKKGVKMEARQHAAAVLFYLSAEYGNLIRKEAEAIPALIRLIKDGSYRSKKNGLVAIFGLVKHAENHRRVVEGGAVPLLVGILKGSENEDLITDSLAVLATLAEKSEGMFAILEEEGLHVAVEILSCSSSRVGREHCVALLLSLSLNGGEEVVGYLVKSPSLMESLYSQLSGGTSRARKKASALIRVLHDFYERRSSGFKISLIPQEQFIHVR 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03719 693 Pfam Armadillo/beta-catenin-like repeat 423 459 IPR000225 GO:0005515
Vimu7g03719 693 Pfam U-box domain 287 356 IPR003613 GO:0004842|GO:0016567
Vimu7g03719 693 Gene3D - 362 676 IPR011989 -
Vimu7g03719 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 554 597 IPR000225 GO:0005515
Vimu7g03719 693 FunFam RING-type E3 ubiquitin transferase 368 679 - -
Vimu7g03719 693 CDD RING-Ubox_PUB 287 339 IPR045210 -
Vimu7g03719 693 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Vimu7g03719 693 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Vimu7g03719 693 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Vimu7g03719 693 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Vimu7g03719 693 PANTHER U BOX DOMAIN-CONTAINING 55 668 - -
Vimu7g03719 693 SUPERFAMILY ARM repeat 383 668 IPR016024 -
Vimu7g03719 693 SMART arm_5 420 460 IPR000225 GO:0005515
Vimu7g03719 693 SMART arm_5 461 502 IPR000225 GO:0005515
Vimu7g03719 693 SMART arm_5 543 584 IPR000225 GO:0005515
Vimu7g03719 693 SUPERFAMILY RING/U-box 287 358 - -
Vimu7g03719 693 FunFam RING-type E3 ubiquitin transferase 286 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03719 Vimu-Chr7 32516925 32526421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03719 1 691 U-box Gene Family AT1G60190 44.193 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03719 - - vra:106779024 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03719 7 32516925 32526421 Vimu7g03719 7 32516925 32526421 ECH