Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03700 ATGGCTAACGAATCCTCTTCAAATGGGTCGCCCATGTCGGATTCCATTACGGCTTCGCCTCCGCCACCGTCCTCGTCGCAGCAGTCATCGGACGACGCAGAGGCTCCGCCACCCTCGGAACCGCCGCCGCCGCCGCAGCCTTCACAGTCATCGCCTTTACCATCGCCGTCACCACCACCCCCAGAAATCTCTTCTCCTCCACCTACCGTACCTCCGCCGAATAAAGCTCCTCCACCGACACCGGAGAATTCCCCTCCTCCACCAACGCCGGTTCATTCACCGCCACCACCAACTCCTTCTACTTCTCCACCACCTACCCCTTCTACTTCTCCACCACCTCCCCTTTCTCCGTCGCCACCTCCGCCAGATCAATCTTCTCCCCCGCCAAAACTTTCTCCGCCTCCTCCGTCACCAAGACGTTCAGCTCCACCACCTTCTCCTACACCGCCGTCACGTTCACAACCGTCACCTTCACCGCCACCTCCACAACCGTCACTATCACCGCCACCTCCATCACCGCAATCTTACGCTCCTCCTCCACAGTTCCTTCGGCCTTCAACTCCAACTGCAATTCCACCTTCACAGGTTTTCCGTATTACCTCGCCTCCGCCGCCGCTGCAGACAGCTCCAGCGTCAACACCCCATTCACAACTGCGACATCCACCAGGATTACCACCGGCAATATTACCAGCATTACCTCCGATTCTCCATATGTCTGCTCCCCCGAAGAGCAACCTTCCGCCGGTGTCTCCAAGCTCCTCCGGTACTAATAGTACAGGACAAATTGTTGGTCTTGCTCTCGTCGGGGTTTTCATCATTGCCTTTCTTGCTATGGTTATTTTCTTTTTCTTAAGGAATAGGAGAGGGAACAACTATTCCGCGCCCTCCCCTGGAAAATCTAATATAAGAGGAGCAGGTACACCAGGAGAGGAGCCTGGTTTTGGGAATGGAGCACAACAAGGTGGCATGCATATAAGATCTCCTTCAGATCCGGCTCTGAGCGGTGGTCAGTTAGTTTTTACCTACGAAAAGATTGCGGAGATCACTAACGGGTTTTCGAGCGAAAACATCATAGGGGAGGGGGGATTTGGGTATGTTTACAAGGCTTCCATGCCTGATGGTAGAGTGGGGGCGCTTAAGATGTTGAAGGCTGGTAGTGGGCAGGGAGAAAGAGAGTTCAGGGCTGAGGTTGACATTATCAGCAGAATCCATCATCGACATTTGGTTTCACTGATTGGTTATTGCATATCAGAACAGCAAAGAGCGCTCATCTATGAGTTCGTTCCTAATGGGAATCTCAATCAGCACTTGCAGGGAAGTGAATTTCCAGTTTTGGATTGGTCCAAGAGGATGAAGATAGCAATTGGTGCTGCAAGGGGCCTGACATATCTTCATGATGGATACTTTGGGCTTGCAAAGCTAACTGACGATGCTAATACTCATGTATCAACTCGGGTGATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACGGATAGATCAGATGTTTTCTCTTTTGGAGTTGTCCTCCTTGAGCTTATAACTGGAAGGAAACCTGTTGACGCAATGCAGCCCTTAGGAGAGGAGAGTTTGGTTGAGTGGGCTCGTCCACTTCTCCTTCATGTACTTGAGACAGGAGAATTTGGTGAACTAGTAGACCCTAAGCTTCTTCAACAATACGATGACAAAGAAATGTTGAAAATGATTGAGGCAGCAGCAGCATGTGTTCGCCACTCTGCTCTAAAGCGACCTCGTATGGTTCAGGTGCTAAGATCCTTAGACAACGGTGATCAACTATACGATCTTTCAAATGGGGTGAAATATGGTCAGAGCACTGTTTATGATTCTGGTCAGTATAATGATGACATTGCAAGATTTAGAAAGATGGTTAATGGAAGCTTTGATGATTCCGAGTTTGATAATCTCAGCTCAGAATTCCGTTCAACTGTTTCAAGAGAAATGGTTGAACTCAACTCTGCAAGCATGTCACGTAGTGATTCACAACTTAAAGTTTTCCACCACCAAAGGAGCCATCCCCAGAACAGGTCTTAA 2070 0.4971 MANESSSNGSPMSDSITASPPPPSSSQQSSDDAEAPPPSEPPPPPQPSQSSPLPSPSPPPPEISSPPPTVPPPNKAPPPTPENSPPPPTPVHSPPPPTPSTSPPPTPSTSPPPPLSPSPPPPDQSSPPPKLSPPPPSPRRSAPPPSPTPPSRSQPSPSPPPPQPSLSPPPPSPQSYAPPPQFLRPSTPTAIPPSQVFRITSPPPPLQTAPASTPHSQLRHPPGLPPAILPALPPILHMSAPPKSNLPPVSPSSSGTNSTGQIVGLALVGVFIIAFLAMVIFFFLRNRRGNNYSAPSPGKSNIRGAGTPGEEPGFGNGAQQGGMHIRSPSDPALSGGQLVFTYEKIAEITNGFSSENIIGEGGFGYVYKASMPDGRVGALKMLKAGSGQGEREFRAEVDIISRIHHRHLVSLIGYCISEQQRALIYEFVPNGNLNQHLQGSEFPVLDWSKRMKIAIGAARGLTYLHDGYFGLAKLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDAMQPLGEESLVEWARPLLLHVLETGEFGELVDPKLLQQYDDKEMLKMIEAAAACVRHSALKRPRMVQVLRSLDNGDQLYDLSNGVKYGQSTVYDSGQYNDDIARFRKMVNGSFDDSEFDNLSSEFRSTVSREMVELNSASMSRSDSQLKVFHHQRSHPQNRS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03700 689 MobiDBLite consensus disorder prediction 1 34 - -
Vimu7g03700 689 MobiDBLite consensus disorder prediction 35 187 - -
Vimu7g03700 689 MobiDBLite consensus disorder prediction 1 225 - -
Vimu7g03700 689 MobiDBLite consensus disorder prediction 665 689 - -
Vimu7g03700 689 MobiDBLite consensus disorder prediction 293 328 - -
Vimu7g03700 689 Pfam Protein tyrosine and serine/threonine kinase 469 531 IPR001245 GO:0004672|GO:0006468
Vimu7g03700 689 Pfam Protein tyrosine and serine/threonine kinase 355 466 IPR001245 GO:0004672|GO:0006468
Vimu7g03700 689 Gene3D Phosphorylase Kinase; domain 1 323 427 - -
Vimu7g03700 689 ProSiteProfiles Protein kinase domain profile. 352 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03700 689 SUPERFAMILY Protein kinase-like (PK-like) 329 599 IPR011009 -
Vimu7g03700 689 Gene3D Transferase(Phosphotransferase) domain 1 428 613 - -
Vimu7g03700 689 PRINTS Proline rich extensin signature 55 72 - -
Vimu7g03700 689 PRINTS Proline rich extensin signature 74 99 - -
Vimu7g03700 689 PRINTS Proline rich extensin signature 2 23 - -
Vimu7g03700 689 PRINTS Proline rich extensin signature 36 52 - -
Vimu7g03700 689 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 271 466 IPR047117 -
Vimu7g03700 689 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 329 427 - -
Vimu7g03700 689 MobiDBLite consensus disorder prediction 239 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03700 Vimu-Chr7 32300396 32304226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03700 251 674 Trihelix Transcription Factor Family AT1G70460 51.148 2.56e-155 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu7g03700 PK_Tyr_Ser-Thr 1.6e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03700 - - vun:114173221 830.861