Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03696 ATGGAGACTTTAGTTTCTTTGGTCTCAGCTACTATATCTATTGCCTGTACTGGGGAGTCTGTGCTTCTCATTAAGGGTCCTCAGGGACGAATAAATAGAGCTATTTGGGGACCACTCAACAGAACCATCATTAGTGCTGGTGAAGATGCTGTTATTCGTATTTGGGATTCAGAGACGGGAAAATTGATTAAGGAGTCAGACAAGGAATCTGGCCATAAAAAGACAGTGACATCACTTGTCAAGTCTGCAGATGGTTCACACTTCCTTACAGGCTCTCTGGACAAGTCTGCTAGGCTTTGGGATACTAGAACGTTGACTCTTATCAAGACCTATGTCACAGAACGGCCAGTCAATGCAGTTGCAATGTCGCCACTTCTTGATCATGTGGTACTTGGAGGTGGTCAGGACGCATCAGCTGTTACAACCACTGATCATCGTGCTGGAAAATTTGAAGCCAAATTCTATGACAAGATTCTTCAAGAAGAAATTGGGGGCGTGAAAGGGCATTTTGGACCAATTAATGCATTGGCCTTTAACCCTGATGGAAAAAGGTATATCCAGTGTCCTTCAACTCCCTCTTGCATTGCATCATGA 594 0.4394 METLVSLVSATISIACTGESVLLIKGPQGRINRAIWGPLNRTIISAGEDAVIRIWDSETGKLIKESDKESGHKKTVTSLVKSADGSHFLTGSLDKSARLWDTRTLTLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKRYIQCPSTPSCIAS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03696 197 Gene3D - 10 191 IPR015943 GO:0005515
Vimu7g03696 197 SMART WD40_4 17 56 IPR001680 GO:0005515
Vimu7g03696 197 SMART WD40_4 59 101 IPR001680 GO:0005515
Vimu7g03696 197 SMART WD40_4 104 143 IPR001680 GO:0005515
Vimu7g03696 197 ProSitePatterns Trp-Asp (WD) repeats signature. 43 57 IPR019775 -
Vimu7g03696 197 Pfam WD domain, G-beta repeat 70 101 IPR001680 GO:0005515
Vimu7g03696 197 SUPERFAMILY WD40 repeat-like 15 186 IPR036322 GO:0005515
Vimu7g03696 197 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 24 61 - -
Vimu7g03696 197 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 104 - -
Vimu7g03696 197 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 26 186 - -
Vimu7g03696 197 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 110 IPR001680 GO:0005515
Vimu7g03696 197 ProSiteProfiles Trp-Asp (WD) repeats profile. 24 65 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03696 Vimu-Chr7 32269869 32271172 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03696 22 187 Eukaryotic Initiation Factors Gene Family AT2G46290 25.301 2.99e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03696 K03246 - gmx:100793485 334.339