Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03691 ATGTTTGAGCAGATATCGTTTTCGTATGAAGATGGACGTCCTGTAGAGGGTAAAGGTGTGGGAAGAAAAATTCTTGATAGGGTGAAAGAGACCTATAACTCAGAACTCAAGGAATTTTCCTATGACGGGAAGAAAACACTTTTTACCTTGGGCTCTCTCAGGTCTGATTGGTTTGAGTTTAATGTTGTTCTCAAGGATGACAGAATGAGGTGCCCAAATAGAGGCAAAACTATTAAAGTTAAGATGAATTTTGCGTTGAAGATTCCATTGCAAGCCACTGTCAATGCTCTCCGTGGACAGGATTCTGATAATTATCAGGAAGCAATAAGAGAGGAGGTGTTCTTAGTTGTGGGGGATTTCGTTCTAGTTTTAGAACCAGCCAGAGTGGTTTATCACTTAACAGAGGTATCATCTGTTGATGTCTCAACCACAATGATAGTTACCCTTGGGCCTGTGATGGACTTCCTCCTTTCCAATCAGAATGTAAAAGATTTGTTTTCTCTGGACTGGGTAAAGGCCAAGAGAATACTGAAAAATTTGAGGATTAAAGCAAGTCCATCTAATCAAGAGTATAAAACTATTGGGCTTAGTAACCTCCCGTGCAAAGACCAACTGTTTACATTAAAGAGAAAGGGTGGAGCAGATTGTGGTGATCCTAAGGAGGTGACCGTGTATGATTATTTTGTTAATCGTTGGAACATAGATCTCTGCTACTCAAGTGATGTACCATGTATTAATGTTGGAAAGCCGAAGCGGCCAACATATATTCCTCTTGAGCTTTGCTCTTTGGTATCCCTTCAACGCTATACTAAAGCTCTAACCACACTCCAAAGATCCTCATTGGTGGAGAAGTCTAGGCAGAAGCCTCTAGAGAGGATGAGAGTGTTGACAGATGCTTTGAGTCGAAGCAATTATGGTTCTGAACCTATGCTTTGTAATCGTGTCATTTCTATCAACTCTGACTTTATTGAAGTTGAAGGTCATGTTTTACAAGCTCCAAGGTGTATAGTGCCTCAAAGGATCAATGATCAGTATTTGACCAATGTTTTACTGAAGATCAATGCTAAGCTTGGTGGCTTGAATTCTATTTTAGAAGCTGAACATGCTCCTTCTATCCCAATTGTTTCTAGAACTCCCACCATCGTTATTGGCATGGACGTGTCTCATGGCTCCCCAGAGCAAACCGATATTCCTTCAATTGCAGCGGTGGTTAGCTCCCTGGAGTGGCCTCTAATATCAAAGTATAGAGCATGTCTCCGAACCCAGTTTCAGAAGGTTGAAATGATTGACAATTTGTTCAAGAAAGTCTCCAATGGGGTGGATAAAGGCATAATTAGGTAA 1341 0.4094 MFEQISFSYEDGRPVEGKGVGRKILDRVKETYNSELKEFSYDGKKTLFTLGSLRSDWFEFNVVLKDDRMRCPNRGKTIKVKMNFALKIPLQATVNALRGQDSDNYQEAIREEVFLVVGDFVLVLEPARVVYHLTEVSSVDVSTTMIVTLGPVMDFLLSNQNVKDLFSLDWVKAKRILKNLRIKASPSNQEYKTIGLSNLPCKDQLFTLKRKGGADCGDPKEVTVYDYFVNRWNIDLCYSSDVPCINVGKPKRPTYIPLELCSLVSLQRYTKALTTLQRSSLVEKSRQKPLERMRVLTDALSRSNYGSEPMLCNRVISINSDFIEVEGHVLQAPRCIVPQRINDQYLTNVLLKINAKLGGLNSILEAEHAPSIPIVSRTPTIVIGMDVSHGSPEQTDIPSIAAVVSSLEWPLISKYRACLRTQFQKVEMIDNLFKKVSNGVDKGIIR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03691 446 ProSiteProfiles PAZ domain profile. 150 265 IPR003100 GO:0005515
Vimu7g03691 446 FunFam Protein argonaute 7 144 269 - -
Vimu7g03691 446 SUPERFAMILY PAZ domain 144 305 IPR036085 GO:0005515
Vimu7g03691 446 Gene3D - 311 369 - -
Vimu7g03691 446 Pfam PAZ domain 153 281 IPR003100 GO:0005515
Vimu7g03691 446 Pfam N-terminal domain of argonaute 15 110 IPR032474 -
Vimu7g03691 446 ProSiteProfiles Piwi domain profile. 334 408 IPR003165 GO:0003676
Vimu7g03691 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 22 335 - -
Vimu7g03691 446 SUPERFAMILY Ribonuclease H-like 335 437 IPR012337 -
Vimu7g03691 446 Gene3D - 370 442 IPR036397 GO:0003676
Vimu7g03691 446 Gene3D paz domain 143 269 - -
Vimu7g03691 446 Pfam Piwi domain 340 436 IPR003165 GO:0003676
Vimu7g03691 446 CDD PAZ_argonaute_like 150 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03691 Vimu-Chr7 32206321 32209642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03691 271 446 Eukaryotic Initiation Factors Gene Family AT5G43810 35.000 1.46e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03691 K11593 - gmx:100779439 418.313