Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03689 ATGCAGATATTCGTCAAAACCCTTACGGGGAAGACCATCACCCTTGAGGTTGAGTCTTCTGACACCATTGATAACGTCAAGGCCAAGATACAGGATAAGGAGGGCATTCCACCGGATCAGCAGCGTCTCATCTTCGCCGGAAAGCAACTCGAGGACGGCCGCACTCTCGCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTCGTCCTCCGTCTCCGCGGTGGCGCCAAGAAGCGCAAAAAGAAGACTTATACGAAACCTAAGAAAATCAAACACAAGCATAAAAAGGTGAAGCTCTCTGTCTTGCAATTTTATAAGGTGGACGACTCCGGCAAGGTGCAGAGGCTCCGCAAGGAGTGTCCCAACGCCGAGTGCGGTGCAGGAACCTTCATGGCCAATCATTTTGATCGTCACTACTGCGGAAATTCTCCGAGGACGTTCTCTCGGGCTGCCCATCCAGGGTCGTTCGTCCAGGCTGTCCTCCCAGGAAAGACAAATCCTAAGATGACTCATTACCTTCTCTACGTGTCTTTGTGGAAACTTCCTCTCCCTTCCACAACGGAAGTTTTTTCTGCACTTTCATTTTCATCTAGGACAGAGAGAGGGCTTGGAGAGGTAAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGTGGGCACTGCACAAGCCTCCTTTCTGTTAACATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAACAAGATGCTAACAAGACTTTGAACAGCCACAGTGCATCCCTGATGACCTATTCTGATTGTGAGGAAGAGGATCTCATTCCAATGAGTAATATTGTGAATAAACCTCCGGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAGAACCCTGACATGGCTCACAAAGAAGCATTTAGTACTGCTGCAAAAAATTGGGCCAATTTTCCCCCAACTCAGTGCAAAGGAGATGATCAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTGATGCTGAGGTGAATGAAGAAGATGGTCAAGGTTTCCGTGGAAGAAAGATCCAAAGGAACTCCATCTTTGAAAGGACACCATTTGAGTGA 1191 0.4752 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGNSPRTFSRAAHPGSFVQAVLPGKTNPKMTHYLLYVSLWKLPLPSTTEVFSALSFSSRTERGLGEVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEQDANKTLNSHSASLMTYSDCEEEDLIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDDQESCSQTDQLVDLDSQVDPPDAEVNEEDGQGFRGRKIQRNSIFERTPFE 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03689 396 SMART ubq_7 1 72 IPR000626 GO:0005515
Vimu7g03689 396 MobiDBLite consensus disorder prediction 339 360 - -
Vimu7g03689 396 Gene3D High mobility group box domain 287 346 IPR036910 -
Vimu7g03689 396 Gene3D - 81 152 IPR038582 -
Vimu7g03689 396 Pfam Ribosomal protein S27a 102 144 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vimu7g03689 396 PANTHER PROTEIN YABBY 6-RELATED 207 351 IPR006780 GO:0007275
Vimu7g03689 396 CDD HMG-box_SF 299 342 - -
Vimu7g03689 396 FunFam Axial regulator YABBY 4 287 354 - -
Vimu7g03689 396 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vimu7g03689 396 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vimu7g03689 396 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vimu7g03689 396 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Vimu7g03689 396 Pfam YABBY protein 207 342 IPR006780 GO:0007275
Vimu7g03689 396 CDD Ubl_ubiquitin 1 76 - -
Vimu7g03689 396 MobiDBLite consensus disorder prediction 339 396 - -
Vimu7g03689 396 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Vimu7g03689 396 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Vimu7g03689 396 MobiDBLite consensus disorder prediction 373 389 - -
Vimu7g03689 396 SUPERFAMILY HMG-box 289 341 IPR036910 -
Vimu7g03689 396 SUPERFAMILY Zn-binding ribosomal proteins 100 148 IPR011332 GO:0006412
Vimu7g03689 396 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vimu7g03689 396 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vimu7g03689 396 Gene3D - 1 80 - -
Vimu7g03689 396 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03689 Vimu-Chr7 32168394 32182327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03689 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 90.541 2.16e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vimu7g03689 YABBY 2.8e-50 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03689 K02977 K25796 gmx:100806755 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03689 7 32168394 32182327 Vimu7g03689 7 32168394 32182327 ECH
Vimu7g03689 7 32168394 32182327 Vimu11g03202 11 51565912 51566959 PCT