Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03679 ATGGTAGTGTTATCACCGGGAAACAACAACAACGACACACTCACATGGAATTATTTGTGGGGGCTTGCTCACTCCTCTTGCCTGGATTCAAATTCTTCATTGCCAAGTTGGTCTGTGGTGGCAAAAAAGGAAAACAAACAATTTTGGCATCTGGGTGATATAGACTGGACCTTCTTTGTGGGAATGGGGAGAGTTGTTGTTAATTATGGTGGCTTGGAGCACTGGTCAGTGGTTGTTATGGAGCTTAGTGGTTTGGTTTTCTGGCTACTGGGGTTGCTGCTTTTGCAGTTGATGGAGATTTCTTCTGCTGCTCTTTCTCCATCTGGCATAAACTATGAAGTTGTAGCTCTGATGGCCATAAAGGGTGACTTGACTGATCCTCACAACGTTCTGGAAAATTGGGATTCTAGTTCTGTTGATCCATGTAGCTGGAGAATGGTTACGTGTTCCTCTGATGGCTCCGTTTCTGCATTGGGATTTCCCAGTCAGAACTTGTCTGGTACACTATCTCCCGGAATTGGAAACCTCACTAACTTGCAATCTAATAATGCCATTTCTGGTAGGATTCCTGCTGCAATAGGAAACTTGGAAAGGCTTCACACACTTGATCTTTCCAATAATGCATTTAGTGGTGAGATACCCAGTTCTTTGGGAGGCCTCAAGAACCTGAATTATTTGAGGTTAAACAATAACAGCCTTACAGGATCCTGTCCTCAGTCTCTTAGCAACATCGAAGGTCTAACCCTTGTGATTGTGGGTAACCCTTTAATTTGTGGTCCAAAAGCAAACAACTGTTCTTCTGTTTTACCAGAGCCACTTTCCTTTCCTCCAGATGCACTAAGAGGCCAATCAGATTCTGGTAAAAAAAGCCATCACGTGGCACTTGCTTTCGGTGCAAGCTTTGGTGCTGCATTTGTCATTGTGATTATAGTTGGGTTTCTTGTTTGGTGGCGATATAGACGCAACCAGCAGATATTCTTTGATGTTAACGAACATTATGATCCGGAGGTGCGTCTTGGTCATTTAAAAAGGTTTTCATTCAAAGAGCTTCGAACTGCAACGGACCATTTCAACTCAAAGAACATTCTTGGAAGAGGTGGCTTTGGAATAGTCTACAAGGCATGCCTAAATGATGGGTCTGTTGTGGCTGTTAAGAGGTTAAAGGACTACAATGCAGCCGGTGGTGAGATCCAATTTCAAACAGAAGTTGAGACAATCAGTTTGGCTGTCCACCGCAATCTTCTCAGGCTTTCGGGGTTTTGCAGCACTCAGCATGAAAGGCTCCTCGTTTATCCATATATGTCTAATGGAAGTGTAGCCTCTAGATTAAAAGATCATATCCATGGCCATCCGGCGTTAGATTGGACTAGACGGAAGAGAATAGCTTTAGGTACAGCAAGAGGGTTGGTTTACTTGCATGAACAATGTGACCCTAAGATTATTCACCGTGATGTGAAAGCAGCTAACATATTGCTAGATGAAGACTTTGAAGCTGTTGTTGGTGATTTTGGTTTAGCCAAGCTTCTGGATCATAGAGACTCCCATGTGACCACCGCCGTGCGTGGCACTGTTGGTCACATCGCTCCAGAGTATCTATCCACTGGCCAATCGTCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAACTGATCACAGGTCACAAGGCTCTAGATTTTGGGCGAGCAGCGAACCAGAAAGGTGTAATGCTTGATTGGGTTAAGAAGCTCCACCAGGATGGAAGATTAAGTCAAATGGTGGACAAAGATCTAAAGGGAAACTTTGATCTGATTGAGTTAGAAGAAATGGTTCAGTTCAATCCTTCACACCGCCCCAAGATGTCAGAAGTATTAAAGATGTTGGAAGGGGATGGCTTGGCTGAGAGATGGGAGGCCTCACAGAGGATTGAAACACCAAGGTTTCGGTCTTGTGAGCCTCAAAGATATTCAGATTTAATAGAGGAATCTTCACTCATAATTGAAGCCATGGAGCTTTCTGGCCCTAGGTGA 2016 0.44 MVVLSPGNNNNDTLTWNYLWGLAHSSCLDSNSSLPSWSVVAKKENKQFWHLGDIDWTFFVGMGRVVVNYGGLEHWSVVVMELSGLVFWLLGLLLLQLMEISSAALSPSGINYEVVALMAIKGDLTDPHNVLENWDSSSVDPCSWRMVTCSSDGSVSALGFPSQNLSGTLSPGIGNLTNLQSNNAISGRIPAAIGNLERLHTLDLSNNAFSGEIPSSLGGLKNLNYLRLNNNSLTGSCPQSLSNIEGLTLVIVGNPLICGPKANNCSSVLPEPLSFPPDALRGQSDSGKKSHHVALAFGASFGAAFVIVIIVGFLVWWRYRRNQQIFFDVNEHYDPEVRLGHLKRFSFKELRTATDHFNSKNILGRGGFGIVYKACLNDGSVVAVKRLKDYNAAGGEIQFQTEVETISLAVHRNLLRLSGFCSTQHERLLVYPYMSNGSVASRLKDHIHGHPALDWTRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGHKALDFGRAANQKGVMLDWVKKLHQDGRLSQMVDKDLKGNFDLIELEEMVQFNPSHRPKMSEVLKMLEGDGLAERWEASQRIETPRFRSCEPQRYSDLIEESSLIIEAMELSGPR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03679 671 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Vimu7g03679 671 FunFam Somatic embryogenesis receptor-like kinase 1 434 643 - -
Vimu7g03679 671 SMART serkin_6 357 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03679 671 Gene3D Ribonuclease Inhibitor 110 275 IPR032675 -
Vimu7g03679 671 Gene3D Transferase(Phosphotransferase) domain 1 434 642 - -
Vimu7g03679 671 Pfam Leucine rich repeat N-terminal domain 111 150 IPR013210 -
Vimu7g03679 671 Pfam Protein kinase domain 358 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03679 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Vimu7g03679 671 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 90 634 - -
Vimu7g03679 671 SUPERFAMILY L domain-like 111 260 - -
Vimu7g03679 671 FunFam Somatic embryogenesis receptor kinase 1 326 433 - -
Vimu7g03679 671 SUPERFAMILY Protein kinase-like (PK-like) 333 624 IPR011009 -
Vimu7g03679 671 Gene3D Phosphorylase Kinase; domain 1 326 433 - -
Vimu7g03679 671 FunFam Leucine-rich repeat receptor-like protein kinase 110 260 - -
Vimu7g03679 671 ProSiteProfiles Protein kinase domain profile. 357 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03679 Vimu-Chr7 32021383 32026885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03679 146 671 Receptor kinase-like Gene Family AT1G60800 72.105 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu7g03679 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03679 - - vum:124829101 1116.29