Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03673 ATGGGTATTGCTGTTACTGGACTAGATGATGGTGGTGTGTCTTCAGACGAAGATTTGAGTACAGGAGATGGTGATGGCCAAGATGGGCAATCAAAGGGTGAAGATCGTGAACTGAAGGATAGACTCTTACGGAAGTTTGGGAGTCACATTGGTACTTTGAAACTGGAGTTTTCAAAAAAGAAAAAGAAAGGTAAACTTCCGAAGGAAGCAAGACAGACATTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCCACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAACCAAAGAAAACGTCATTGGAAACCATCCGAGAATATGCAGTTTTCCATGATGGAAAATCTTAACGGACGGTTCCTTGGTGATGAATGA 423 0.4161 MGIAVTGLDDGGVSSDEDLSTGDGDGQDGQSKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLGDE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03673 140 SMART HOX_1 59 124 IPR001356 GO:0003677
Vimu7g03673 140 Gene3D - 56 130 - -
Vimu7g03673 140 Pfam ELK domain 37 58 IPR005539 GO:0003677
Vimu7g03673 140 CDD homeodomain 69 121 IPR001356 GO:0003677
Vimu7g03673 140 SUPERFAMILY Homeodomain-like 58 129 IPR009057 -
Vimu7g03673 140 ProSiteProfiles 'Homeobox' domain profile. 57 120 IPR001356 GO:0003677
Vimu7g03673 140 MobiDBLite consensus disorder prediction 1 38 - -
Vimu7g03673 140 ProSiteProfiles ELK domain profile. 37 57 IPR005539 GO:0003677
Vimu7g03673 140 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 128 - -
Vimu7g03673 140 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Vimu7g03673 140 Pfam Homeobox KN domain 77 116 IPR008422 GO:0003677|GO:0006355
Vimu7g03673 140 FunFam Homeobox protein knotted-1-like 2 62 124 - -
Vimu7g03673 140 SMART ELK_2 37 58 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03673 Vimu-Chr7 31883542 31884084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03673 9 140 Homeobox Transcription Factor Family AT1G23380 73.684 1.48e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu7g03673 Homeobox_KN 1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03673 - - gmx:100794719 248.44