Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03658 ATGGCTTCTCTAACTTCTCTTCTTTCTCTTCTCATTCCTCTTCTTGCAACTTCTTGTGTAACTGTAGCTGTGTTTTCCTTCCAAGCTTCTCTCAAAACAACTCACTTTGAACCGTTCAGATGCTCCTCCATGATCAGCACATGCAATGCCTCACTCTACCACATAAGTTACAATCACAACGCAGATGACTTAGCCAACTTTTACTCCGTTCACCCCTCCCAAATCAAACCTATAATGCGTGGCACAAAGCAAGATTACCTTATAACAGTGCCTTGTTCCTGCAATAGCTCCGATGACCTTGGCGGATATTTCTATGATACAACCTACAAGGTGAAGCCTAATGACTCTTCTGTGGAGATTAACAACATTGTTTACAGTGGTCAAGCCTGGTCTATTGACAGAGAAGTGAACCCAAATGAGGACTTAGCAATACATCTTCCTTGTGGGTGTTCAGAAAAAAAAGACTCCCAAATTGTTGTCACGTATACAGTTCAGCGGAATGATACACCCATATCAATCGCTACTCTGCTAAATGCTACCTTAGATGACCTGGTGAGTATGAACGAAGTTCTGGTTCAGAACCCCTCATTCATAGATATTAGTTGGGTGCTGTATGTTCCAAGGGAACTCAATGGTTTGCCTTCCAAAGGAAAAGAAAAGAAACACTATATAATCATTGGCATCTTAGCGGGTGTGGCATTCTTTTCAACTATCACTTTGATCATTCTCGTTGTCGTTCTTAGGAGATCCAGGGCCAGTGTAGCCGCAAAAAATGATCCAAATATTGTGTCTAAAAGATCAATTGGAAATAGAACTATTTCCATAAAGGACTTTCATGCAGAACATATAGAAGATGCAACTCCATTTGAATCAGAAAGGCCAGTAATTTATACTCTAGAGGAGATTGAAGATGCTACAAATAACTTTGATGAAACGCGAAAGATTGGAGTAGGTGGATACGGGAGTGTGTATTTCGGAATGTTAGAAGAGAAGGAGGTTGCAGTAAAGAAGATGAGGTCTAATAAATCCAAAGAATTCTATGCAGAACTCAAGGCCTTGTGTAAGATCCATCACATTAACATTGTGGAGTTGTTGGGATATGCCAGCGGAGATGACCACCTTTATTTGGTGTATGAGTATGTTCCAAATGGATCTCTCAGTGAGCACCTTCATGATCCATTACTGAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGGGTTCAAATTGCATTGGATGCAGCAAAAGGTCTTGAATACATACATGATTACACGAAAGCTCGATATGTGCACCGTGATATAAAGACTTCCAATATTCTCCTTGATGAGAAGCTAAGAGCAAAGGTAGCAGATTTTGGACTTGCAAAGCTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTGGTTGGAACACCGGGCTACCTTCCACCAGAATCTGTTAAGGAGCTTCAAGTGACTATAAAAACAGATGTTTTTGCATTTGGGGTGGTTCTGTCAGAGTTGATAACAGGGAAACGTGCACTATTTCGGGACAACCAACAAGCCAACAATATGAAATCACTTGTTACAGTTGTTACCCAAATCTTCGGAAATAAATACCCAGAAAATGTTTTAGCAGATGCCATAGATGGGAATCTTCAGCATAGCTATCCCATGGAAGATGTCTACAAGATGGCAGAAGTAGCTCATTGGTGTTTGTGCGAAGATCCAAACGACAGGCCTGTGATGAGGGAGATAGTTGTGGCATTGTCACAGATTGTTATGTCATCCACAGAATGGGAAGCATCATTAGGTGGAGACAGCCAAGTCTTCAGCGGAGTTCTTGATGGAAGATGA 1842 0.4131 MASLTSLLSLLIPLLATSCVTVAVFSFQASLKTTHFEPFRCSSMISTCNASLYHISYNHNADDLANFYSVHPSQIKPIMRGTKQDYLITVPCSCNSSDDLGGYFYDTTYKVKPNDSSVEINNIVYSGQAWSIDREVNPNEDLAIHLPCGCSEKKDSQIVVTYTVQRNDTPISIATLLNATLDDLVSMNEVLVQNPSFIDISWVLYVPRELNGLPSKGKEKKHYIIIGILAGVAFFSTITLIILVVVLRRSRASVAAKNDPNIVSKRSIGNRTISIKDFHAEHIEDATPFESERPVIYTLEEIEDATNNFDETRKIGVGGYGSVYFGMLEEKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARVQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNQQANNMKSLVTVVTQIFGNKYPENVLADAIDGNLQHSYPMEDVYKMAEVAHWCLCEDPNDRPVMREIVVALSQIVMSSTEWEASLGGDSQVFSGVLDGR 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03658 613 FunFam PTI1-like tyrosine-protein kinase 3 381 599 - -
Vimu7g03658 613 SMART LysM_2 161 207 IPR018392 -
Vimu7g03658 613 SMART serkin_6 309 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03658 613 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Vimu7g03658 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Vimu7g03658 613 CDD LysM 160 206 IPR018392 -
Vimu7g03658 613 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 40 607 IPR044812 GO:0019199|GO:0045087
Vimu7g03658 613 ProSiteProfiles LysM domain profile. 160 206 IPR018392 -
Vimu7g03658 613 ProSiteProfiles Protein kinase domain profile. 309 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03658 613 SUPERFAMILY Protein kinase-like (PK-like) 294 588 IPR011009 -
Vimu7g03658 613 Pfam Protein kinase domain 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03658 613 SUPERFAMILY LysM domain 160 207 IPR036779 -
Vimu7g03658 613 Gene3D Transferase(Phosphotransferase) domain 1 381 602 - -
Vimu7g03658 613 FunFam Kinase family protein 283 380 - -
Vimu7g03658 613 Gene3D LysM domain 153 212 IPR036779 -
Vimu7g03658 613 Gene3D Phosphorylase Kinase; domain 1 288 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03658 Vimu-Chr7 31679546 31683392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03658 289 613 Receptor kinase-like Gene Family AT1G51940 52.266 3.31e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vimu7g03658 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03658 - - gmx:100800907 1010.36