Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03643 ATGACGACCAGATTCAAGAAGAACAGGAAGAAGCGTGGCCACGTGAGTGCTGGTCACGGTCGTATCGGAAAGCACCGAAAGCACCCCGGTGGTCGGGGAAATGCCGGTGGCATGCACCACCATCGGATCCTGTTCGACAAGTACCACCCTGGTTATTTCGGGAAGGTGGGAATGCGATACTTCCACAAGCTCCGCAACAAGTTCCACTGCCCCATCGTCAACATCGACAAGCTCTGGTCTCTCCTCCCCCAGGAGGCAAAGGACAAAGCTCTAAAATCCAAGGACACTGCCCCTCTCATCGACGTCACACAGCATGGATACTTTAAGGTCCTTGGGAAAGGCGTCCTACCCGAAAACCAGCCCTTCGTTGTGAAAGCCAAGCTTATTTCGAAGATCGCCGAGAAGAAGATTAAGGAAGCCGGGGGCGCTGTTGTTCTCACCGCTTAG 447 0.5414 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPIVNIDKLWSLLPQEAKDKALKSKDTAPLIDVTQHGYFKVLGKGVLPENQPFVVKAKLISKIAEKKIKEAGGAVVLTA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03643 148 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 145 IPR021131 -
Vimu7g03643 148 Hamap 50S ribosomal protein L15 [rplO]. 1 147 IPR030878 GO:0003735|GO:0006412|GO:0015934
Vimu7g03643 148 ProSitePatterns Ribosomal protein L15 signature. 109 141 IPR001196 GO:0003735|GO:0005840|GO:0006412
Vimu7g03643 148 Gene3D - 58 148 - -
Vimu7g03643 148 SUPERFAMILY Ribosomal proteins L15p and L18e 6 147 IPR036227 -
Vimu7g03643 148 FunFam 60S ribosomal protein L27a 58 148 - -
Vimu7g03643 148 MobiDBLite consensus disorder prediction 1 35 - -
Vimu7g03643 148 PANTHER 60S RIBOSOMAL PROTEIN L27A 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03643 Vimu-Chr7 31515908 31516354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03643 1 148 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 88.514 1.28e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03643 K02900 - gmx:100817971 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03643 7 31515908 31516354 Vimu10g01303 10 13572651 13574981 ECH
Vimu7g03643 7 31515908 31516354 Vimu7g03643 7 31515908 31516354 ECH
Vimu7g03643 7 31515908 31516354 Vimu10g01303 10 13572651 13574981 PCT