Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03642 ATGCCTCTTCTACTCGCTCGCACACCACCATCTTCACTTCCTCCAATCCTTCACCACCACTACAACAACAACAACCACCTTCTAATCGCACCTTCTCAGAAGCGCTTCCCTCTCATTGCAGGGCCAATTCTTCTTCCCCGGCGCATTCTAGAATCACCGCCTCTCAAGTGCGCCTCCATCAACGGAGTCCCCGTTCGTAACACTCCAGAACCTTCCACAGAACAAGTCTACGCCCGCGACTTACTTCAGAGGATTCGTAAATGGCTCGACTTTTTACCGTCGATACTTCCCGGCGGACGGTGGTGGGACTTCTCTGACGACGTTGACGTTCAGCTGGTGGCGCAGCCAGTGACCGTGTGGCGCGCGCTAGGCAAAATGTGGGAGCTTGTCGCGCGTGACAGATGGGTCATCATCGCTGCTTTCTCTGCTCTCATTGTTGCTGCTGTTTCGGAGATTTCTATTCCTCATTTCTTGACGGCGTCCATTTTCTCGGCACAGGGTGCGGACCTTGCTGTTTTTCATCGGAATGTGCGCTTGTTGGTTGTATTGTGTGTGACTTCGGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACGCTATACTCTTCTCTTCTACTGCAGGACATATCGTTTTTTGACAATGAAACGGTAGGTGATTTGACAAGTAGGCTTGGCGCTGATTGTCAACAAGTGTCAAGAGTTATTGGAAATGATCTTAACTTGATATTGCGCAACTTTCTTCAGGGTGGAGGTTCATTAATCTACTTGCTGATTTTATCTTGGCCACTTGGTTTATGTACATTGGTGATATGCTCCATATTAGCAGCAGTTATGTTACGCTATGGAAGTTACCAAAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCGGCAAATGATGTAGCTCAAGAGACATTCTCTCTTATTAGAACTGTACGAGTTTATGGAACAGAAGAAGAAGAATATGGAAGGTATAATTGGTGGCTAGGGAAATTAGCTGACATCAGCTTGCGACAAAGTGCTGCTTATGGAGTTTGGAATTTTAACTTTAACATCCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAATGTCTATTCTAGGGGGTCATATCACAGCTGAGAAACTTACCAAGTTTATTCTATACAGTGAATGGTTAATCTACTCTACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTATTCCATTTAATGGATCTCTCCCCTAGCAGCCAATTCACAGAAAGAGGCAAGGATACTTGCTTGACAATGGTGGTCGTCATAAGCAATATAGGTATAAAGTTGCAGAGGTTAATGGGGTGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCGAGGCCAACGGTATCTGTAGTGCAACATGTTAGCTTTGCTGTCCATCCTGGTGAGGTGGTTGCAATAGTTGGACTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGACTCTATGAGCCTACGAATGGTCAGATTTTGGTAGATGATATCCCTATTCAAGACTTGGACATCATGTGGTGGAGAGAGAGAATTGGATTTGTGGGCCAGGAACCCAAACTCTTCCGGATGGATATTAGTTCAAACATTAGATATGGATGTAGAGATGTAAAGCAGGAGGATATTGAATGGGCTGCAAAGCAAGCCTATGCCCATGACTTTATCTCAGCACTTCCCAATGGTTATGAGACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATTCTTGATGAAGCCACAAGTGCACTTGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTTCGATCTGTGAGAAGTGATTCTGCAACCAGAAGTGTCATAGTCATCGCACACAGGCTTTCTACCATTCAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAATTGTTGAGGTTGGTAAACTATTGATTCATTTTGATGCTCTAAAATTTCTAACATTGAAAAACATACAAAAGATTGGAAGTCACAGGGAACTTCTCTTAAGAGATGGTTTATATGCACGGTTAACTAGGAAACAGGCTGATGCCATGACATGA 2199 0.4393 MPLLLARTPPSSLPPILHHHYNNNNHLLIAPSQKRFPLIAGPILLPRRILESPPLKCASINGVPVRNTPEPSTEQVYARDLLQRIRKWLDFLPSILPGGRWWDFSDDVDVQLVAQPVTVWRALGKMWELVARDRWVIIAAFSALIVAAVSEISIPHFLTASIFSAQGADLAVFHRNVRLLVVLCVTSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLILRNFLQGGGSLIYLLILSWPLGLCTLVICSILAAVMLRYGSYQKKAARLIQEVTASANDVAQETFSLIRTVRVYGTEEEEYGRYNWWLGKLADISLRQSAAYGVWNFNFNILYHSTQVIAVLFGGMSILGGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLSPSSQFTERGKDTCLTMVVVISNIGIKLQRLMGCIEFLNVSFHYPSRPTVSVVQHVSFAVHPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILVDDIPIQDLDIMWWRERIGFVGQEPKLFRMDISSNIRYGCRDVKQEDIEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGQIVEVGKLLIHFDALKFLTLKNIQKIGSHRELLLRDGLYARLTRKQADAMT 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03642 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 688 IPR027417 -
Vimu7g03642 732 Pfam ABC transporter transmembrane region 138 404 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g03642 732 Pfam ABC transporter 487 633 IPR003439 GO:0005524
Vimu7g03642 732 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 468 705 IPR003439 GO:0005524
Vimu7g03642 732 FunFam ABC transporter B family member 26, chloroplastic 119 438 - -
Vimu7g03642 732 SUPERFAMILY ABC transporter transmembrane region 125 435 IPR036640 GO:0005524|GO:0016020
Vimu7g03642 732 CDD ABC_6TM_TAP 140 427 - -
Vimu7g03642 732 Gene3D ABC transporter type 1, transmembrane domain 120 439 IPR036640 GO:0005524|GO:0016020
Vimu7g03642 732 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 138 419 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g03642 732 ProSitePatterns ABC transporters family signature. 605 619 IPR017871 GO:0005524|GO:0016887
Vimu7g03642 732 PANTHER ABC TRANSPORTER B FAMILY 132 688 IPR039421 -
Vimu7g03642 732 FunFam Multidrug ABC transporter ATP-binding protein 460 731 - -
Vimu7g03642 732 SMART AAA_5 495 690 IPR003593 GO:0016887
Vimu7g03642 732 Gene3D - 458 731 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03642 Vimu-Chr7 31504356 31512533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03642 208 730 Calmodulin-binding Proteins AT2G36910 31.963 4.51e-67 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03642 - - vra:106777591 1293.1