Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03635 ATGGAAGAAGCAATGAGGCGTCTCAACGGTGTGGCTCCGATTCTCGGACCCGACCCGAAAGACTCATCAGTCGGTGAAAACCCTAAACGCTCCACCGCCGTTAACAAGCGGACTTTAAGAGAAGACGGCGGCGGCGGAGCCATGAGGTATCGTGGTGTGAGGCGCAGGCCGTGGGGACGTTATGCCGCCGAGATTAGGGACCCTCAGTCGAAGGAGCGACGGTGGCTCGGAACCTTCGACACCGCCGAGGAAGCTGCCTGCGCCTACGACTGCGCCGCCCGAGCCATGCGCGGTCTCAAGGCTCGCACCAACTTCGTATACCCCACTTCTCCGCAAGCTTCTTCCGCCACAGCCGACCACTTCTTTCATTCTTTTAGTAATAACAACTTCACCAAACACTCTCCGTCACTACCCTTCACCAGCCACCGTAGTCGCCACTCGACTGGTTCCGCCAGCTGCTTTGACTACCCTAGCGCCGTTGACTTTTCCTTTTCCAACCCGCGAAACCCTTCTTCCTCACTCAACATGCTTCTCCTTCGCGACCTCATTAACTCTTCCTCAAATAACCCTTCCTTGCTTTCTTCTTCCACCCACAACTTCCACGACCAGTTCTACAACAAGGGTTCTTCTACTTTTCCATCGTTACCAACTGTTTCTTCTTCTTCTTCTTCTTCACCTCTTATTCCTAGTTATTCGGTGAGTTACCCTTTGGAAGGCACTCCGTCTGTTAATGTGAACACGCTATGTGGAACTAATTTCACTGAAAAAGGTGATGATGACAGTGGGTCTGGATTTTTCTCTCGAGAGTCTTCGGATTCGGGATTGTTGGAAGAGATAGTTAACAAGTTCTTACCCAAAGCGAAGCCTAATAAATGCGAGAGTTTGCCAAAAATGGAGAGTGTCCGAAACCCTCAGGAGTCCGTTCTTCCTTCTCTTATTTCTCAATCAGCACTTGTTTCCACCGCGCAATGCTATGATGACACGAAGAAGGGGTTTCAGAAGAATGAGAGCTTCGGCCTTTCTTTTGATCATCAGGATCTTCCCATGCAGAAATTTGACAACTTTAATGGGTTTCATCACTTGCAGGGTATGGCTCTGGGGAATGAACAAACCATGACGAATCATGCAGAGAATTGCATCGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATTCTTTTGCAATCAGGATGCAAAATGCTTAG 1206 0.4925 MEEAMRRLNGVAPILGPDPKDSSVGENPKRSTAVNKRTLREDGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQASSATADHFFHSFSNNNFTKHSPSLPFTSHRSRHSTGSASCFDYPSAVDFSFSNPRNPSSSLNMLLLRDLINSSSNNPSLLSSSTHNFHDQFYNKGSSTFPSLPTVSSSSSSSPLIPSYSVSYPLEGTPSVNVNTLCGTNFTEKGDDDSGSGFFSRESSDSGLLEEIVNKFLPKAKPNKCESLPKMESVRNPQESVLPSLISQSALVSTAQCYDDTKKGFQKNESFGLSFDHQDLPMQKFDNFNGFHHLQGMALGNEQTMTNHAENCIVEDVFQYQELLNSFAIRMQNA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03635 401 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vimu7g03635 401 MobiDBLite consensus disorder prediction 33 49 - -
Vimu7g03635 401 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Vimu7g03635 401 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Vimu7g03635 401 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 31 230 - -
Vimu7g03635 401 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vimu7g03635 401 MobiDBLite consensus disorder prediction 1 50 - -
Vimu7g03635 401 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Vimu7g03635 401 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Vimu7g03635 401 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Vimu7g03635 401 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vimu7g03635 401 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03635 Vimu-Chr7 31418816 31420021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03635 1 286 AP2-EREBP Transcription Factor Family AT1G24590 37.874 3.48e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu7g03635 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03635 - - vum:124821082 707.983