Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03623 ATGGAATTTGAGGATCAAGAGGACCAAGAGGAGGAGCAGTGTATGGGTGCCGCAGCTTACGACCCCACCCGGATGAAGCTTCCGCTCGGTCCGGAGGCAGTTATGGCGGCGCAGCCGGTCAGAAGCACCACCAACGGCGGCGCTGGGAGGGCACGCTACAGAGAGTGTCTGAAGAATCACGCTGTCGGCATCGGCGGCCACGCGCTCGACGGTTGCGGCGAGTTCATGGCTGCGGGGACGGAGGGTTCTCTCGACGCGCTTAAGTGTGCAGCCTGCAGCTGCCACCGTAACTTTCACCGCAAGGAGAGCGATGGGGCCGGCGCCTCCGTCGGCGTTGGGGACCCGTACTTGGTTTCGCACCATCCCTTGCACCACGGTCCGCCGCCTCAGTTCGCGGCGTACTACCGGACCCCAACTGGATACCTTCAGGTGGGGGGGCAGGCGCGCGTGGCTGGGACGCTGGCACTGCCGTCGACGTCCGGCGGCGGTGGGACGCAGAGCACTCGGGAGGACCAGGAGGACATTTCGAACCCGAGTGCAGGAGGAACGGGGTCCAAGAAACGGTTCAGAACAAAGTTCACGCAGGAGCAAAAGGACAAAATGCTTGAACTTGCTGAAAAACTAGGGTGGAGGATTCAGAAACACGACGAGGGTGTGGTCCAAGCCTTCTGCAACGAAACCGGGGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 750 0.612 MEFEDQEDQEEEQCMGAAAYDPTRMKLPLGPEAVMAAQPVRSTTNGGAGRARYRECLKNHAVGIGGHALDGCGEFMAAGTEGSLDALKCAACSCHRNFHRKESDGAGASVGVGDPYLVSHHPLHHGPPPQFAAYYRTPTGYLQVGGQARVAGTLALPSTSGGGGTQSTREDQEDISNPSAGGTGSKKRFRTKFTQEQKDKMLELAEKLGWRIQKHDEGVVQAFCNETGVKRHVLKVWMHNNKHTLGKKP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03623 249 MobiDBLite consensus disorder prediction 154 189 - -
Vimu7g03623 249 SUPERFAMILY Homeodomain-like 174 247 IPR009057 -
Vimu7g03623 249 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 53 102 IPR006456 -
Vimu7g03623 249 MobiDBLite consensus disorder prediction 158 184 - -
Vimu7g03623 249 Pfam ZF-HD protein dimerisation region 51 103 IPR006456 -
Vimu7g03623 249 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 52 102 IPR006456 -
Vimu7g03623 249 FunFam Zinc-finger homeodomain protein 2 173 247 - -
Vimu7g03623 249 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 245 - -
Vimu7g03623 249 NCBIfam homeobox domain, ZF-HD class 186 242 IPR006455 -
Vimu7g03623 249 Gene3D - 171 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03623 Vimu-Chr7 31160620 31161369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03623 49 245 ZF-HD Transcription Factor Family AT4G24660 54.315 2.26e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu7g03623 ZF-HD_dimer 1.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03623 - - gmx:100808910 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03623 7 31160620 31161369 Vimu7g03623 7 31160620 31161369 PCT