Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03614 ATGCAACATCTTCAAAGTTACTATAACTCAGAAGCTAAAATGATAAGAGGTGGGTTTCCTCGGCCATTCATCTCAAGAACATACCAAACAAGTTTCTTGAAGCAAAGATCAAAGACAGAGATAAAAGTTGTAGCCGCAAAGAAACACAGTGAAGCTGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAACTATCCTCCCCAACTTGATCAAACATGGTGAAATAGATTTTGTTATGAACCATCAGAAGGACAAGGCATCGGTGTTGGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAGGTATCAGAAGTGGAACAAGATAGGTGTGGTAGCTCTTCAAAGGATGTTGTTAAGTTTCCTAGTGGGGCAGACAGGTTGAGATTGGAAAAATGTAATAATGAGGAGGACCTGGTGAAGGCCACATTGAGTTGCGAGGATAGTCTGGGATTGATGTCTGCAATATCAAGGGCAATGGGGTCAGTGAAAACCAAAGTGGTGAAGGCTGAGATAGTGAGTGTGGGAGGGAGAAACAGAAGTGTGTTTTGGGTTCAAGGTCTTGGGAATGATCGTATGGGGATGCTCAAGAGCTCTTTGAAGATTGCCATGCACAAGCCAGCCTTTAAGATGCGCCGTTCTACTCACTAA 666 0.4294 MQHLQSYYNSEAKMIRGGFPRPFISRTYQTSFLKQRSKTEIKVVAAKKHSEAEKRRRMRINGQYETLRTILPNLIKHGEIDFVMNHQKDKASVLAETIKQVKELKKKVSEVEQDRCGSSSKDVVKFPSGADRLRLEKCNNEEDLVKATLSCEDSLGLMSAISRAMGSVKTKVVKAEIVSVGGRNRSVFWVQGLGNDRMGMLKSSLKIAMHKPAFKMRRSTH 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03614 221 Pfam Helix-loop-helix DNA-binding domain 48 104 IPR011598 GO:0046983
Vimu7g03614 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 113 IPR036638 GO:0046983
Vimu7g03614 221 Gene3D - 44 115 IPR036638 GO:0046983
Vimu7g03614 221 Coils Coil 94 114 - -
Vimu7g03614 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 104 IPR011598 GO:0046983
Vimu7g03614 221 PANTHER TRANSCRIPTION FACTOR BHLH30 33 213 IPR045847 GO:0003700|GO:0006355
Vimu7g03614 221 SMART finulus 50 110 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03614 Vimu-Chr7 31041676 31042704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03614 43 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 35.762 6.07e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g03614 HLH 7.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03614 - - gmx:102667782 293.508